Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30216g00058 ATGAAACTCGACACCACTAATGGCGACGCGAAACCCTCCGGATCTTTCACTGAAGGCGGCGGGGCTGCTGACGACGACGACGTGCTCGTGCCTCCGTTGAACTTCGCCGTCGTGGACAACGGCATTTTCCGCTCTGGCTTTCCCGAGCCCGCCAATTTCGGGTTTCTGAAATCGCTCCACCTTCGTTCCGTTATATGTTTGTGCCCCGAACCCTATCCGGAACACAATTCAGAGTTTCTGAAGGCTCATGGAATTAGGCTTTACCAATTCGGGATCGATGGCTGTAAGGAACCCTTTGTCAACATCCCAGAGGATACTATTCGAGAAGCTTTGAAAGTACTCCTTGATGTTAGGAACCACCCTGTGTTAATTCATTGTAAACGTGGGAAGCACCGCACTGGTTGTTTGGTGGGATGCTTAAGAAGATTGCAGAGGTGGTGTTTGTCATCTGTTTTTGACGAGTACCAAAGGTTTGCAGCAGCCAAAGCCAGAGTGTCAGACCAGAGGTTCATAGAATTATTCGACATTTCTTGTTTGAAGCACTACCCATTATCATTTTCATGCTCAAGGAAATAG 576 0.4844 MKLDTTNGDAKPSGSFTEGGGAADDDDVLVPPLNFAVVDNGIFRSGFPEPANFGFLKSLHLRSVICLCPEPYPEHNSEFLKAHGIRLYQFGIDGCKEPFVNIPEDTIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRRLQRWCLSSVFDEYQRFAAAKARVSDQRFIELFDISCLKHYPLSFSCSRK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30216g00058 191 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 29 176 IPR029021 -
Stsc30216g00058 191 Pfam Tyrosine phosphatase family 29 181 IPR004861 -
Stsc30216g00058 191 PANTHER TYROSINE-PROTEIN PHOSPHATASE 27 180 - -
Stsc30216g00058 191 CDD PFA-DSP_Siw14 29 175 - -
Stsc30216g00058 191 ProSiteProfiles Dual specificity protein phosphatase domain profile. 34 188 IPR020422 GO:0006470|GO:0008138
Stsc30216g00058 191 Gene3D Protein tyrosine phosphatase superfamily 28 178 IPR029021 -
Stsc30216g00058 191 FunFam probable tyrosine-protein phosphatase At1g05000 28 178 - -
Stsc30216g00058 191 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311|GO:0016791
Stsc30216g00058 191 PRINTS Plant and fungal dual specificity phosphatase signature 29 46 IPR020428 GO:0016791
Stsc30216g00058 191 PRINTS Plant and fungal dual specificity phosphatase signature 66 79 IPR020428 GO:0016791
Stsc30216g00058 191 PRINTS Plant and fungal dual specificity phosphatase signature 102 116 IPR020428 GO:0016791
Stsc30216g00058 191 PRINTS Plant and fungal dual specificity phosphatase signature 85 99 IPR020428 GO:0016791
Stsc30216g00058 191 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30216g00058 Stsc-Chr30216 313011 315402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30216g00058 1 191 Protein tyrosine phosphatase (PTP) family AT4G03960 68.205 1.58e-98 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30216g00058 K18045 - gmx:100785520 327.405