Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30216g00016 ATGGTTTCGCTGGAGGAATCTGGCTCCAACAACTCTAACCGTTTTCCGTTGGAGCGGAGTTACCACTCCGTCTCCGCGATTTCTCCCAAAACGCACCGTCGTATAGGCAGGTCTATGCGCACCATACGCTCCAACTTTTTTCAAGACGATAACAGCACCAACAGTTGCTATTCCTTTACTGAGAAATCCACTTGCTTATCGGAGAATCTCACCGACTCCGTCGTCGACCTCCGCCTCGGCGAGCTCGCCTCCAGGAACGTCGTCAAGCCTTCCTCCTCCGTCGCCGATGAGGACCTCCTAGACCTCTCTCACGCCTTCAGTGACTTCTCCGCCTGCAGTAGTGACATCTCCGGTGAGCTCCAGCGCCTTGCATGCTTACCGTCGCCGGAATACGTCCAGAAGAGCAACGACGCTGGCGCCGGAGGTAACCAGGAACAGGAGACGGAGCCAGAGCCTTGCGTAGGGTTCTTGCAGAGGGAGAATTTCTCCACGGAGATCATCGAGAGTATCTCGCCGGAGGATCTTCAGCCAACAGTGAAGCTCTGCATCGACGGCCTCCAGTCGCCTTCGATCGCCGTGAAGCGATCGGCAGCCGCGAAGCTCCGTCTCTTAGCGAAGAACCGCGCGGATAACAGAGTCCTAATCGCCGAGTCCGGCGCAGTTCCGGTTCTGGTTCCGCTGCTTCGGTGCAGCGATCCGATGACGCAGGAGCATGCGGTGACGGCGCTGCTCAACCTCTCACTCCACGAGGACAACAAGACGCTGATAACCAATGCCGGCGCAGTGAAGTCGCTGATCTACGTGCTCAAGACAGGAACAGAAACCTCGAAGCAGAACGCAGCGTGCGCGCTTCTCAGCCTAGCGCTGGTGGAGGAGAACAAGAGCTCGATCGGCGCATCCGGCGCGATTCCGCCACTGGTGTCGCTGCTGATGAACGGCTCCAACCGCGGGAAGAAGGACGCGCTGACAACGCTGTACAAGCTGTGCTCAGTGAAGCAGAACAAGGAGCGGGCAGTGAGCGCCGGCGCGGTGAGGCCGCTGGTTGAGCTTGTGGCGGAACAAGGATCCGGCATGGCGGAGAAGGCTATGGTAGTGCTGAACAGCCTAGCAGCGATTCAAGAAGGGAAAGACGCAATCGTGGAGGAAGGCGGAATTGCCGCTCTGGTTGAAGCGATTGAAGATGGTTCGATGAAGGGAAAAGAGTTCGCCGTATTAACGCTTCTTCAGCTGTGTGGTGAGAGTGCTATCAACAGAGGGTTTCTTGTGAGAGAAGGCGCCATTCCTCCTCTCGTTGCTCTTTCCCAGTCCGGTACTGCTCGAGCTAAGCACAAGGCTGAAACACTCCTTCGATATTTGAGAGAATCAAGACAAGAAGCATCGTCTTCAAGTTCTTAA 1395 0.5656 MVSLEESGSNNSNRFPLERSYHSVSAISPKTHRRIGRSMRTIRSNFFQDDNSTNSCYSFTEKSTCLSENLTDSVVDLRLGELASRNVVKPSSSVADEDLLDLSHAFSDFSACSSDISGELQRLACLPSPEYVQKSNDAGAGGNQEQETEPEPCVGFLQRENFSTEIIESISPEDLQPTVKLCIDGLQSPSIAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLVPLLRCSDPMTQEHAVTALLNLSLHEDNKTLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLMNGSNRGKKDALTTLYKLCSVKQNKERAVSAGAVRPLVELVAEQGSGMAEKAMVVLNSLAAIQEGKDAIVEEGGIAALVEAIEDGSMKGKEFAVLTLLQLCGESAINRGFLVREGAIPPLVALSQSGTARAKHKAETLLRYLRESRQEASSSSS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30216g00016 464 FunFam U-box domain-containing protein 4 318 459 - -
Stsc30216g00016 464 FunFam U-box domain-containing protein 4 165 317 - -
Stsc30216g00016 464 Gene3D - 322 463 IPR011989 -
Stsc30216g00016 464 SMART arm_5 290 330 IPR000225 GO:0005515
Stsc30216g00016 464 SMART arm_5 331 371 IPR000225 GO:0005515
Stsc30216g00016 464 SMART arm_5 208 248 IPR000225 GO:0005515
Stsc30216g00016 464 SMART arm_5 414 454 IPR000225 GO:0005515
Stsc30216g00016 464 SMART arm_5 372 412 IPR000225 GO:0005515
Stsc30216g00016 464 SMART arm_5 249 289 IPR000225 GO:0005515
Stsc30216g00016 464 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 219 261 IPR000225 GO:0005515
Stsc30216g00016 464 PANTHER U BOX DOMAIN-CONTAINING 103 453 - -
Stsc30216g00016 464 Pfam Armadillo/beta-catenin-like repeat 210 247 IPR000225 GO:0005515
Stsc30216g00016 464 Pfam Armadillo/beta-catenin-like repeat 292 330 IPR000225 GO:0005515
Stsc30216g00016 464 Gene3D - 163 321 IPR011989 -
Stsc30216g00016 464 SUPERFAMILY ARM repeat 176 453 IPR016024 -
Stsc30216g00016 464 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 301 343 IPR000225 GO:0005515
Stsc30216g00016 464 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 342 384 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30216g00016 Stsc-Chr30216 112792 116716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30216g00016 156 457 U-box Gene Family AT2G23140 48.710 8.86e-85 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30216g00016 - - gmx:100806768 729.169