Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30216g00016 | ATGGTTTCGCTGGAGGAATCTGGCTCCAACAACTCTAACCGTTTTCCGTTGGAGCGGAGTTACCACTCCGTCTCCGCGATTTCTCCCAAAACGCACCGTCGTATAGGCAGGTCTATGCGCACCATACGCTCCAACTTTTTTCAAGACGATAACAGCACCAACAGTTGCTATTCCTTTACTGAGAAATCCACTTGCTTATCGGAGAATCTCACCGACTCCGTCGTCGACCTCCGCCTCGGCGAGCTCGCCTCCAGGAACGTCGTCAAGCCTTCCTCCTCCGTCGCCGATGAGGACCTCCTAGACCTCTCTCACGCCTTCAGTGACTTCTCCGCCTGCAGTAGTGACATCTCCGGTGAGCTCCAGCGCCTTGCATGCTTACCGTCGCCGGAATACGTCCAGAAGAGCAACGACGCTGGCGCCGGAGGTAACCAGGAACAGGAGACGGAGCCAGAGCCTTGCGTAGGGTTCTTGCAGAGGGAGAATTTCTCCACGGAGATCATCGAGAGTATCTCGCCGGAGGATCTTCAGCCAACAGTGAAGCTCTGCATCGACGGCCTCCAGTCGCCTTCGATCGCCGTGAAGCGATCGGCAGCCGCGAAGCTCCGTCTCTTAGCGAAGAACCGCGCGGATAACAGAGTCCTAATCGCCGAGTCCGGCGCAGTTCCGGTTCTGGTTCCGCTGCTTCGGTGCAGCGATCCGATGACGCAGGAGCATGCGGTGACGGCGCTGCTCAACCTCTCACTCCACGAGGACAACAAGACGCTGATAACCAATGCCGGCGCAGTGAAGTCGCTGATCTACGTGCTCAAGACAGGAACAGAAACCTCGAAGCAGAACGCAGCGTGCGCGCTTCTCAGCCTAGCGCTGGTGGAGGAGAACAAGAGCTCGATCGGCGCATCCGGCGCGATTCCGCCACTGGTGTCGCTGCTGATGAACGGCTCCAACCGCGGGAAGAAGGACGCGCTGACAACGCTGTACAAGCTGTGCTCAGTGAAGCAGAACAAGGAGCGGGCAGTGAGCGCCGGCGCGGTGAGGCCGCTGGTTGAGCTTGTGGCGGAACAAGGATCCGGCATGGCGGAGAAGGCTATGGTAGTGCTGAACAGCCTAGCAGCGATTCAAGAAGGGAAAGACGCAATCGTGGAGGAAGGCGGAATTGCCGCTCTGGTTGAAGCGATTGAAGATGGTTCGATGAAGGGAAAAGAGTTCGCCGTATTAACGCTTCTTCAGCTGTGTGGTGAGAGTGCTATCAACAGAGGGTTTCTTGTGAGAGAAGGCGCCATTCCTCCTCTCGTTGCTCTTTCCCAGTCCGGTACTGCTCGAGCTAAGCACAAGGCTGAAACACTCCTTCGATATTTGAGAGAATCAAGACAAGAAGCATCGTCTTCAAGTTCTTAA | 1395 | 0.5656 | MVSLEESGSNNSNRFPLERSYHSVSAISPKTHRRIGRSMRTIRSNFFQDDNSTNSCYSFTEKSTCLSENLTDSVVDLRLGELASRNVVKPSSSVADEDLLDLSHAFSDFSACSSDISGELQRLACLPSPEYVQKSNDAGAGGNQEQETEPEPCVGFLQRENFSTEIIESISPEDLQPTVKLCIDGLQSPSIAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLVPLLRCSDPMTQEHAVTALLNLSLHEDNKTLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLMNGSNRGKKDALTTLYKLCSVKQNKERAVSAGAVRPLVELVAEQGSGMAEKAMVVLNSLAAIQEGKDAIVEEGGIAALVEAIEDGSMKGKEFAVLTLLQLCGESAINRGFLVREGAIPPLVALSQSGTARAKHKAETLLRYLRESRQEASSSSS | 464 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30216g00016 | 464 | FunFam | U-box domain-containing protein 4 | 318 | 459 | - | - | |
Stsc30216g00016 | 464 | FunFam | U-box domain-containing protein 4 | 165 | 317 | - | - | |
Stsc30216g00016 | 464 | Gene3D | - | 322 | 463 | IPR011989 | - | |
Stsc30216g00016 | 464 | SMART | arm_5 | 290 | 330 | IPR000225 | GO:0005515 | |
Stsc30216g00016 | 464 | SMART | arm_5 | 331 | 371 | IPR000225 | GO:0005515 | |
Stsc30216g00016 | 464 | SMART | arm_5 | 208 | 248 | IPR000225 | GO:0005515 | |
Stsc30216g00016 | 464 | SMART | arm_5 | 414 | 454 | IPR000225 | GO:0005515 | |
Stsc30216g00016 | 464 | SMART | arm_5 | 372 | 412 | IPR000225 | GO:0005515 | |
Stsc30216g00016 | 464 | SMART | arm_5 | 249 | 289 | IPR000225 | GO:0005515 | |
Stsc30216g00016 | 464 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 219 | 261 | IPR000225 | GO:0005515 | |
Stsc30216g00016 | 464 | PANTHER | U BOX DOMAIN-CONTAINING | 103 | 453 | - | - | |
Stsc30216g00016 | 464 | Pfam | Armadillo/beta-catenin-like repeat | 210 | 247 | IPR000225 | GO:0005515 | |
Stsc30216g00016 | 464 | Pfam | Armadillo/beta-catenin-like repeat | 292 | 330 | IPR000225 | GO:0005515 | |
Stsc30216g00016 | 464 | Gene3D | - | 163 | 321 | IPR011989 | - | |
Stsc30216g00016 | 464 | SUPERFAMILY | ARM repeat | 176 | 453 | IPR016024 | - | |
Stsc30216g00016 | 464 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 301 | 343 | IPR000225 | GO:0005515 | |
Stsc30216g00016 | 464 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 342 | 384 | IPR000225 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30216g00016 | Stsc-Chr30216 | 112792 | 116716 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30216g00016 | 156 | 457 | U-box Gene Family | AT2G23140 | 48.710 | 8.86e-85 | 271 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30216g00016 | - | - | gmx:100806768 | 729.169 |