Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30216g00014 ATGGAAATGGACCCTGGCAGTGGCAAGCTTTTCATTGGCGGGATTTCATGGGACACAAATGAAGACCGACTCAGACAATATTTCCAGCGCTTTGGTGATGTTGTGGAAGCAGTGATCATGAAGGATCGGACTACCGGGCGTGCCCGTGGATTCGGCTTTGTTGTTTTTGCTGACGCTTCTGTTGCTGAACTAGTTGTTTTGGAGAAACATGTCATTGATGGTAGAACTGTTGAAGCAAAAAAGGCTGTCCCCAGAGATGACCAGAATGTTCTGAACAAAAGCAACAGCAGTAATCACAGTTCACCTGGTCCTACTCCATCCCGTACAAAGAAGATATTTGTCGGAGGTCTAGCATCAACGGTTACCGAGAGCGACTTCAAGAAGTACTTTGATCAATTCGGAACAATTACAGATGTGGTTGTGATGTATGATCATAACACCCAAAGGCCTAGAGGTTTTGGATTCATCACCTATGATTCGGAGGAAGCAGTTGACAAAGTTCTATACAAATCTTTCCATGAGTTGAATGGTAAATTGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATTATCTCCGAGTCCGAGCAGAGGCCAGTTAGGTGGATATAGTTTTGGTCTTAGTAGAGTTAGTAGCTGCCCCAATGGTTTCATTCAGGGATTTAATGCAGGTGTAGTTGGAAGGAATGGACTTAAAATAGATGGAAGATCAAATGCTGTTACTGTTGGCCATAGTGAATATCCTCTTTTTGGTCATAGTTATGGGACAGGACTCAACTTTGAGCCACCATTGACCCAAAATGGAACTTCAAACTTTACTTCTTCCTTCATAGGGCGAACATTGAACTCTTCATTCAGTGGTAGTCCAAGCAGGTACAGCAATGCCATGGGTTATGCTGGTGCAAATGTAGGCAACAATTCAGCCATGAGTTCTACAAGTCAGAACTTGTGGGGAAATGGGAACCTTAACTATGCTGCTAACATTGCAAATTCCGATGCTCTTGCTGGTTATCGGAATGAAAATTCAAGCATGGCTTCTTTTGGTAGTATAGGATCACTTTGGAGTTCCTCCCTTGGTGCAGATCAAACTGGAATTATCGGCTCCGGATATGGTAAGGGCAGTCTTAGTAGCTCTGGAGATGTGAATTTAGGGTCGAAAACAGTAGGTTATGGAAAAAATAGTGATAACATTGTTACATCAAGTTCTTCATATTCCTTACCAAATTTAAGTTATGATGAGGCATACAATGCTTCTTATGATGCTGGGTCATTTTACGGGGACCGTATGTGGAGTACATTGCCTTCAGAATTAGAGGATTCCAGCTCTCTTGGTTTTGGCATTGACCATGCTGTTTCAGGCTTAATGCGCAAAGGCTCTGGCAGCCACATTGGAGCTTATGCTGTTGCCAACACTCAACCAAATAGAGGAATTGTTGCCTAG 1437 0.4315 MEMDPGSGKLFIGGISWDTNEDRLRQYFQRFGDVVEAVIMKDRTTGRARGFGFVVFADASVAELVVLEKHVIDGRTVEAKKAVPRDDQNVLNKSNSSNHSSPGPTPSRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKSFHELNGKLVEVKRAVPKELSPSPSRGQLGGYSFGLSRVSSCPNGFIQGFNAGVVGRNGLKIDGRSNAVTVGHSEYPLFGHSYGTGLNFEPPLTQNGTSNFTSSFIGRTLNSSFSGSPSRYSNAMGYAGANVGNNSAMSSTSQNLWGNGNLNYAANIANSDALAGYRNENSSMASFGSIGSLWSSSLGADQTGIIGSGYGKGSLSSSGDVNLGSKTVGYGKNSDNIVTSSSSYSLPNLSYDEAYNASYDAGSFYGDRMWSTLPSELEDSSSLGFGIDHAVSGLMRKGSGSHIGAYAVANTQPNRGIVA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30216g00014 478 SUPERFAMILY RNA-binding domain, RBD 100 206 IPR035979 GO:0003676
Stsc30216g00014 478 Gene3D - 7 87 IPR012677 -
Stsc30216g00014 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 178 IPR000504 GO:0003723
Stsc30216g00014 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 70 IPR000504 GO:0003723
Stsc30216g00014 478 MobiDBLite consensus disorder prediction 83 110 - -
Stsc30216g00014 478 CDD RRM2_Hrp1p 111 188 - -
Stsc30216g00014 478 Gene3D - 88 204 IPR012677 -
Stsc30216g00014 478 CDD RRM1_hnRNPA_hnRNPD_like 10 80 - -
Stsc30216g00014 478 SMART rrm1_1 9 80 IPR000504 GO:0003723
Stsc30216g00014 478 SMART rrm1_1 111 183 IPR000504 GO:0003723
Stsc30216g00014 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Stsc30216g00014 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 2 473 - -
Stsc30216g00014 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 84 IPR000504 GO:0003723
Stsc30216g00014 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 107 194 - -
Stsc30216g00014 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 7 89 - -
Stsc30216g00014 478 SUPERFAMILY RNA-binding domain, RBD 4 100 IPR035979 GO:0003676
Stsc30216g00014 478 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30216g00014 Stsc-Chr30216 101064 104852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30216g00014 10 189 Eukaryotic Initiation Factors Gene Family AT2G36660 32.461 2.74e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30216g00014 K14411 - qsa:O6P43_031333 589.726