Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30216g00011 ATGCAAGCCTCCCAGAAACACTCAACCTCAGCTGGTATTCACATATACCACCACCAGCCAGTGCAAGGCATTGATCCTTACAATCATTACCAAATATTGCAAAGCAATTCATGCCATGATATCCATGATAGTAGCAGCCAGGGTACCAATGTGTCATTTGAAGCCTCCAAGGAGCAATACTATACCCTTGATTCATCCCCAGCAATCAATGGTCTCATAGGTTGTGATTCACCTTCCTGTGCTAGTGTATCATCCAATAGGAGCCCTTTCTCTCCACAGAATTCTCAGTCATACTATTCAGATCAGCACCAGTCTTCTGACAACACCTATGGATCACCGATAAGCGGTTGCTCAAGTGCTGAAGATAGCTATGAATTGAAGAACAAGCTAAGAGAATTGGAGATTACATTGTTGGGGCCAGAACCAGATATTGCTGATAGTTCACTAGGGTGGATGGATAATGTGTTGGTGAAGATGGTTTCGGTTGCTGGGGATCCGATACAGAGGCTAGGTGCATACATGTTGGAAGGTCTTAGAGCAAGGTTTGAATCATCTGGGAGCTTAATTTACAAGGCATTGAAGTGTGAACAACCAACTAGCAAGGATCTAATGACTTATATGCATGTCTTGTACCAGATTTGCCCATATTGGAAATTTGCTTACATATCTGCAAATGTTGTCATTGGAGAAGCAATGCAGAATGAAGCAAGGATTCACATAATTGACTTCCAAATTGCACAAGGCACACAGTGGTTCTTGCTCATCCAAGCTCTTGCTCGTCGCCCGGGTGGACCACCATTCGTCAGTGTCACCGGCGTTGATGATTCCCAATCAAATCATGCCAGGGGTGGAGGACTTCACATTGTGGGAAAAAAGCTCTCAGAATATGCTAATTCTCTTGGGGTACCCTTTGAGTTCCACAGTGCTGCAATGTGTGGATCAGAGGTTGAGCTAGAGAACCTTGTGATTCGGCCCGGGGAAGCTCTTGCTGTGAACTTCCCTTATGTTCTACACCACATGCCAGATGAGAGTGTAAGCACTGAGAATCACAGGGACAGGCTATTGAGGTTGGTGAAGAGCTTGTCACCAAAGGTTGTTACCCTTGTTGAGCAAGAATCCAACACCAACACCTCACCCTTTTTCCAAAGATTTGTTGAGACCCTTAATTACTACTCTGCCATGTTTGAATGCATCGATGTGGCTCGTCCCAGGGACGATAAGCAGAGGATCAGCGCAGAACAGCACTGCGTGGCTCGGGACATTGTCAACATGATAGCTTGTGAGGGCCCTGAGAGGGTGGAAAGGCATGAGCTTCTAGGAAAATGGAGGTCAAGATTTTCCATGGCTGGTTTTGCACCTTGCCCTATGAGTTCTTCAGTCATGGCTGCAGTTAGAAGCCTTTTGAGCGAGTTCAATGAGAATTATAGAGTTGAACAAAGAGATGGTGCTTTATACCTAGGATGGAAGAATAGAGCTATGGCCACTTCTTCTGCATGGACATGTTACTGA 1509 0.4539 MQASQKHSTSAGIHIYHHQPVQGIDPYNHYQILQSNSCHDIHDSSSQGTNVSFEASKEQYYTLDSSPAINGLIGCDSPSCASVSSNRSPFSPQNSQSYYSDQHQSSDNTYGSPISGCSSAEDSYELKNKLRELEITLLGPEPDIADSSLGWMDNVLVKMVSVAGDPIQRLGAYMLEGLRARFESSGSLIYKALKCEQPTSKDLMTYMHVLYQICPYWKFAYISANVVIGEAMQNEARIHIIDFQIAQGTQWFLLIQALARRPGGPPFVSVTGVDDSQSNHARGGGLHIVGKKLSEYANSLGVPFEFHSAAMCGSEVELENLVIRPGEALAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETLNYYSAMFECIDVARPRDDKQRISAEQHCVARDIVNMIACEGPERVERHELLGKWRSRFSMAGFAPCPMSSSVMAAVRSLLSEFNENYRVEQRDGALYLGWKNRAMATSSAWTCY 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30216g00011 502 Pfam GRAS domain family 156 500 IPR005202 -
Stsc30216g00011 502 MobiDBLite consensus disorder prediction 84 117 - -
Stsc30216g00011 502 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 156 493 IPR005202 -
Stsc30216g00011 502 ProSiteProfiles GRAS family profile. 117 500 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30216g00011 Stsc-Chr30216 83006 86291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30216g00011 1 499 GRAS Transcription Factor Family AT4G17230 56.169 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc30216g00011 GRAS 9.3e-121 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30216g00011 - - gmx:100819190 840.876