Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30216g00003 ATGGGTCGCTCTCGCGGGAATTTTCACCACGCCGATGAGGACCCAAACCAAAGGTCAAGGAGAAAAAAGAATGCTGCTAGTGGAGAAAATTTAGAGCCTGGAGCTGCTGGGCAGGGAGCAAGTGAAGGGAAAAGGGCTTTGTATCACTGTAATTATTGTAATAAAGATATTACAGGAAAAGTCCGCATCAAGTGTGCTATGTGCCCTGATTTTGACCTATGTATAGAATGTTTTTCTGTTGGAGCTGAGGTGACACCGCACAAAAGCAGTCACCCTTACAGGGTTATGGATAATTTATCTTTCCCTCTTATTTGCGCTGACTGGAATGCAGATGATGAAATTCTGCTTCTAGAGGGCATTGAAATGTATGGCTTGGGAAACTGGGCAGAAGTTGCTGAGCATGTTGGGACAAAGAACAAAGAATCATGCATAGAACACTACAGAAATATATACTTGAACTCCCCATTCTTTCCTCTTCCGGACATGTCTCATGTTGTTGGGAAAAACAAAAAAGAACTTCTTGCCATGGCAAAAGGACAGGGCGAGGACAAGAAAGGAATTTCCATGGCAGATGGTCTTAAGGAAGAATCTGCCTTTTCTCCCTCTAGAGTCAAAGTTGAAGATTCTCATAAAGCTGGTTCCTCTGGCTCCAATCAGAAGGCCTCAAATGCAGCCCGTGGAAAAGACGGCCTTGGTGTTGTTAAATTGGAAGATTCTCAAGTAGACAGGAATTTTGGTGGAAAGAAGCCAAATTCCTCAGGAAATGAAGGTCCTTCATTGGTAGAATCCAGTGGTTATAATTCAAAAAGACAGGAATTTGATCCAGAATACGATAATGATGCTGAACAACTACTTGCTGAAATGGAATTTAAGGACACTGACACAGAGGAAGAGAGAGAGATAAAACTACGTGTCTTGCGTATCTATGGGAAAAGGCTTGATGAACGAAAGCGTAGAAAGGATTTCATTCTTGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTAACACCTGAGGAGAAGGCANNNNNNNNNNCTTTCATACCAAGGAGGAACATGAGGAATTGCTTCGGACAGTTATTACCGAACACAGAACTCTTAAAAGACTTCAAGATCTCAAGGAAGCGCGAGCTGCCGGTTGCCGCAATGCAGCTGAAGCTGATAGGTATCTGGTACATAAGAGAAGAAAGGAAGCTGATGAAAGTGCGCGTAGGGTAA 1224 0.4232 MGRSRGNFHHADEDPNQRSRRKKNAASGENLEPGAAGQGASEGKRALYHCNYCNKDITGKVRIKCAMCPDFDLCIECFSVGAEVTPHKSSHPYRVMDNLSFPLICADWNADDEILLLEGIEMYGLGNWAEVAEHVGTKNKESCIEHYRNIYLNSPFFPLPDMSHVVGKNKKELLAMAKGQGEDKKGISMADGLKEESAFSPSRVKVEDSHKAGSSGSNQKASNAARGKDGLGVVKLEDSQVDRNFGGKKPNSSGNEGPSLVESSGYNSKRQEFDPEYDNDAEQLLAEMEFKDTDTEEEREIKLRVLRIYGKRLDERKRRKDFILERNLLYPNPFEKDLTPEEKAXXXXFIPRRNMRNCFGQLLPNTELLKDFKISRKRELPVAAMQLKLIGIWYIREERKLMKVRVG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30216g00003 407 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 347 - -
Stsc30216g00003 407 Gene3D - 102 153 - -
Stsc30216g00003 407 MobiDBLite consensus disorder prediction 245 268 - -
Stsc30216g00003 407 CDD SANT 108 150 IPR001005 -
Stsc30216g00003 407 MobiDBLite consensus disorder prediction 1 27 - -
Stsc30216g00003 407 SMART zz_5 44 89 IPR000433 GO:0008270
Stsc30216g00003 407 SMART sant 104 153 IPR001005 -
Stsc30216g00003 407 MobiDBLite consensus disorder prediction 184 276 - -
Stsc30216g00003 407 FunFam Transcriptional adapter 2 101 153 - -
Stsc30216g00003 407 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Stsc30216g00003 407 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Stsc30216g00003 407 Gene3D - 40 96 IPR043145 -
Stsc30216g00003 407 Pfam Zinc finger, ZZ type 47 88 IPR000433 GO:0008270
Stsc30216g00003 407 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Stsc30216g00003 407 SUPERFAMILY RING/U-box 48 110 - -
Stsc30216g00003 407 MobiDBLite consensus disorder prediction 1 38 - -
Stsc30216g00003 407 CDD ZZ_ADA2 48 96 IPR041983 -
Stsc30216g00003 407 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Stsc30216g00003 407 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Stsc30216g00003 407 Pfam Myb-like DNA-binding domain 108 150 IPR001005 -
Stsc30216g00003 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Stsc30216g00003 407 FunFam Transcriptional adapter 41 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30216g00003 Stsc-Chr30216 37241 41821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30216g00003 1 343 EF-hand Containing Proteins AT3G07740 50.276 1.46e-112 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30216g00003 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30216g00003 K11314 - gmx:100815514 639.802