Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30216g00002 ATGTCTGGGGCGGATGCTCCTGTTTTTTTGACATGGGAGGAGAGGATTATATGCCATGAGCGTGGGAACCGTGTGATTCACTTCTACTTGAAGGATTCCTTGGGGAATTCGGTGCTTGCTGTTGTGGGGACTGAGAGGAGTGTGAGGCACATGATGTATGTTGTCCCTGACCATTTCTTGCAGGCTTATGGATCTGTACATTCCATCAATGCGTGTAAATGGCGGGCGAGGCGAGAGGTCGTCGAGTGGCTTACTTGTTTGGTTTCCAGGAACCATCCATCTGATTCAGCTGTTGAGGTGGATGATGCAGCAAAAGCTTTAGAATCTCTCAAGTTATTATCATCTGGAACCAGCGCTCATAAAAAAACTTTACCCGATAAACTGATTTCAAGGAAATTGAGATTCCAGAGTTCAGATATTGAATGGTCGGGCATTGCTTGGTATTGTGCTAAACAGCTTAAGCACTACCCAGGGTTTTGTAGGAATGGGACAACCATTTATGTTCATTCGTTTGTATATATTATGGCTGAAGAAGAAAATCACTATCTGGGTTACCTGGAAGATATGTATGAAGACAAGAAGAAACAAAAGAAGGTTAAGGTCCGGTGGTTTCACCATGGTCGGGAAGTTAAGAATGTGATTCCACAGCTGAATCTGCAAGACGGAGAGGTTTTCATAACACCCCATGTTCAAGTGATCAGTGCTGAGTGTGTCAATGGCCCTGCAATTGTTTTGACCCCTAAGCATTATGAGAAATGCGTGTCTGCTATGCAGCACTCCTCATCATCAGAGGTCCATATATGCTCTCGGCAGTTCAAAAACAATAAACTTAAGCCCTTCACACTCACTAAGCTGCGTGGATACAGTAACCAATCTGTGCTTTCTTTTTTGGGTGATCCTATTGTTTCTAAGAGAAAAGCCAAGAGTCATAAAATGGAGATAGATGATGATGAGGACTTCACTCAAGACGATCCTCTAAAGTCCAGCAATAAGAGGAACAAAATTCCTAAAGGATATCAAGTACTTGAAAACGGTTCTATTGTTCTGCAAAACTCTGCTCTGAAAAAGAGTGAACAAAAATACCCAAGTTTGAAGTTAACACTATCGAAGAAAACAATGGGTATCAAGTTTGTCGGACCTAAGCCTCAGCATCAGTTGCCTTTTAATGTCGATGATAAGGTCGAGTTTCTCTGTCAAGATAGTGGCATTCGAGGATGCTGGTTCAGGTGTAAAATCTTGAGTGCATCTCAGAGGCAACTGAAGGTCCAGTATGATGATCTTTTGGATGCAGACGACATAGACAAGCTAGAGGAATGGATCCCTGCAACTAGAGTAGCAGCTGCTGACAAACTGGGTATGCGGTGTTCAGGTCGCTTNNNNNNNNNNACTCCGAAAGATACTACGGATCATGCTTTTGAGATTGGAACTGCAGTAGATGCCTGGTGGAGTGATGGATGGTGGGAAGGTGTTATAACTGCAGTTGATGTTGGTGGAGTTGGAACTTTTCAAGTTTATACACCTGGTGAAGAAAGGTTACTAACCGTCGAGAAGAAGGACATTCGGATTTCCCGAGATTGGTTCGATAATAGGTGGGTTGATATAGTGGGAAAGCCTAACATTTGCAGCCAGTTACCTTCAAATGTTAGTTCTCGTGTTGGGCTATCAGCTAATTCTGCTGTGGTAGACGGATCTGTGTCCGGTGGTTCTGCTATATTAGAGAGTAAGTCATCTTCGATTCCCAAAGTTGAAGTTGCTGCAAAGGTTGAGCAAGAATTATCTGGTTTGGAAGCACCCGATGAACCAGAAAGTTTGAAGGGAGTAGTCACTTTGGGGAAGCCACTAGCTGCCATCGATGAAGACAAGGATATTTACTCGGGTGCTGGTGGTTGTGAGGGTGACACCAACACCATTGGTGGTGATGATAAGGAGGAACTCAATACCATTGACGGTGACAAGGATGTTTCTTGTGGTGACACAGGAAAAAATGATGGTGGCGATGACAAAGTGGAAGAGAAGAGTGAGGGAAATTTGGTGTCAAAGGAACAACATCTTGATTCTGCAGAACAAAAACTCGATGCAGCAGAAGCAAGTAAAGTTGCATCAACATCTAATATAGCTAAATGA 2124 0.4322 MSGADAPVFLTWEERIICHERGNRVIHFYLKDSLGNSVLAVVGTERSVRHMMYVVPDHFLQAYGSVHSINACKWRARREVVEWLTCLVSRNHPSDSAVEVDDAAKALESLKLLSSGTSAHKKTLPDKLISRKLRFQSSDIEWSGIAWYCAKQLKHYPGFCRNGTTIYVHSFVYIMAEEENHYLGYLEDMYEDKKKQKKVKVRWFHHGREVKNVIPQLNLQDGEVFITPHVQVISAECVNGPAIVLTPKHYEKCVSAMQHSSSSEVHICSRQFKNNKLKPFTLTKLRGYSNQSVLSFLGDPIVSKRKAKSHKMEIDDDEDFTQDDPLKSSNKRNKIPKGYQVLENGSIVLQNSALKKSEQKYPSLKLTLSKKTMGIKFVGPKPQHQLPFNVDDKVEFLCQDSGIRGCWFRCKILSASQRQLKVQYDDLLDADDIDKLEEWIPATRVAAADKLGMRCSGRXXXXTPKDTTDHAFEIGTAVDAWWSDGWWEGVITAVDVGGVGTFQVYTPGEERLLTVEKKDIRISRDWFDNRWVDIVGKPNICSQLPSNVSSRVGLSANSAVVDGSVSGGSAILESKSSSIPKVEVAAKVEQELSGLEAPDEPESLKGVVTLGKPLAAIDEDKDIYSGAGGCEGDTNTIGGDDKEELNTIDGDKDVSCGDTGKNDGGDDKVEEKSEGNLVSKEQHLDSAEQKLDAAEASKVASTSNIAK 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30216g00002 707 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 385 647 - -
Stsc30216g00002 707 Pfam Agenet domain 391 445 IPR008395 -
Stsc30216g00002 707 Gene3D - 147 373 IPR043151 -
Stsc30216g00002 707 SMART BAH_4 164 283 IPR001025 GO:0003682
Stsc30216g00002 707 Coils Coil 677 704 - -
Stsc30216g00002 707 Pfam BAH domain 165 276 IPR001025 GO:0003682
Stsc30216g00002 707 MobiDBLite consensus disorder prediction 636 692 - -
Stsc30216g00002 707 ProSiteProfiles BAH domain profile. 164 283 IPR001025 GO:0003682
Stsc30216g00002 707 MobiDBLite consensus disorder prediction 308 333 - -
Stsc30216g00002 707 MobiDBLite consensus disorder prediction 623 707 - -
Stsc30216g00002 707 SMART agenet_At_2 470 528 IPR014002 -
Stsc30216g00002 707 SMART agenet_At_2 386 451 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30216g00002 Stsc-Chr30216 30689 36466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30216g00002 400 526 PHD Transcription Factor Family AT5G58610 26.316 9.43e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30216g00002 - - gmx:100816046 872.463