Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30215g00041 ATGAGCAAGAAGAACAGGAAATTCAAGGATCTTCATGGAGTTCTTAGCCTTCTAGCGCTGTGCTTGTTGTTTCAGAGCTTTGGTCTATGCCGCTCTTTGAACGAAGAAGGTAGAGCTCTATTGAAGTTGAAGGAAGGGATTGTGAGTGACCCTTTTGGAGCTTTGTCAGATTGGGTTGATGATCAAGTATCTGTTAGTCCTTGCAATTGGTTTGGTGTTGAATGCTCTTCACATGGAAGAGTTGTGGTCTTGAATTTGAAAGACCTTTGTCTTGGAGGAACTTTGACACCGGAGCTTGCGAACCTTGTTCATATAAAGTCCATCGTTTTGAGGAACAATTCCTTTTTCGGAATAGTTCCTGAATGTATTGTGCACTTGAAAGAATTGGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGGACCTTTACCTGCGGATCTCGGGAGTAATATTTCGTTATCGATCCTTTTGCTGGACAACAATGAACTTCTTGGTGGTTTCTCTCCTGAAATTAACGAATTGACTATCCTTTCAGAATCTCAAGTAGATGAAAAACAACTGACTAATGCTGAAAAAATGCTGGCTTGTACAGAAAGATACACAACACGGCATGTTGGTCAAAACAATTTACGGAGGATACTGCAATCTAGTGAGCACAACGATATTCATAATCGTGCAGCAGCTAATCCTCTTAGCCCTGCTCCATCCCCTCAGCCAGATCCTCCTTTACCTTCCCCTCGGCCGAGTCCTGCTTCTGCTCCCTCACGGTCAATTCCTCCTTCTCATTCTCGTTCTCGTTCTCCTTCTCCTTCTCCTTCTCCATCCGCATCAGAAAAACCACAACCACCAATAAAGCCAATTTCTCCGAATAGAAATAATTCTGTTGATCCTCCTACTGTTTCTCCAAATGGAAATAATTCTGCTTCTCCTCCTACCGGTCCAACTTCCGGCTCTAAAATACAACCTGAAACCAAATCATCAAAGAGTCATCGAGTTGCTATTGTGGCTGGAGTTATCGGCGGTGCTGTGTTTCTAATTATTTCTAGCATTGGCATATATCTCTGTAAAACTAACAAGGTAGCTACTGTAAAACCTTGGGCTACAGGATTAAGTGGACAGCTTCAAAAGGCGTTTGTGACAGGTGTGCCAAAGTTAAAGAGATCCGAGCTTGAGGCAGCGTGTGAAGATTTCAGTAATGTTATTGGAACTTCGCCCATTGGTACAGTTTACAAAGGGACTTTATCAAGTGGTGTTGAAATAGCTGTAGCATCTATTACAAAGGATGACTCCAAGAATTGGTCAAAGACTTCAGAAGCACAATTTCGGAAGAAGATTGATACGCTATCGAAAATGAACCACAAGAATTTCGTAAATCTTATTGGATATTGTGAAGAGGAGGAACCTTTCACCAGAATGGTGGTTTTCGAATATGCCCCGAACGGAACACTATTTGAGCATTTACATGTAAAAGAAGCTGAGCATCTGGAATGGGGAACAAGACTTAGAGTTGCTATGGGAACGGCTTACTGCTTGCAACATATGCACCAGTTAGACCCTCCCATGGTCCATAGCAACCTTGACTCACAAGCTATCCACCTCACCGACGATTATGCTGCCAAAGTATCAGATTTCAGTTACCTGAATGAAATAATTTCGGCCGACACAAAAGCCGGTGCTAGAAAACACACCACTGATACTACATTAACAGGCAACATTCACAGCTTCGGTGTCATATTACTTGAATTAGTAACCGGCCAGCTTCCTTACTCGGCCGAAAATGGTTCTCTTGGAGAATGGATGTTGCCCTACTTACAAGGCAACCGGCCGCTAAGAGAAATCATTGATCCGACACTATTGTCCTTCCAAGAAGAACAGCTCCAAGGAATCACTGCATTGATTATATCTTGCATTGATCACGATCCGCAGCGAAGACCAACAATGAAAGAGGTGAGTGAGAGATTGAGAGATATAACGAAGATAACGCCCGATCAGGCTGTTCCGAAACTTTCACCACTTTGGTGGGCAGAGCTTGAGATTGCTTCTACCAATTCTATGGATGCAAGCTGA 2067 0.4301 MSKKNRKFKDLHGVLSLLALCLLFQSFGLCRSLNEEGRALLKLKEGIVSDPFGALSDWVDDQVSVSPCNWFGVECSSHGRVVVLNLKDLCLGGTLTPELANLVHIKSIVLRNNSFFGIVPECIVHLKELEVLDLGYNNFSGPLPADLGSNISLSILLLDNNELLGGFSPEINELTILSESQVDEKQLTNAEKMLACTERYTTRHVGQNNLRRILQSSEHNDIHNRAAANPLSPAPSPQPDPPLPSPRPSPASAPSRSIPPSHSRSRSPSPSPSPSASEKPQPPIKPISPNRNNSVDPPTVSPNGNNSASPPTGPTSGSKIQPETKSSKSHRVAIVAGVIGGAVFLIISSIGIYLCKTNKVATVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGTSPIGTVYKGTLSSGVEIAVASITKDDSKNWSKTSEAQFRKKIDTLSKMNHKNFVNLIGYCEEEEPFTRMVVFEYAPNGTLFEHLHVKEAEHLEWGTRLRVAMGTAYCLQHMHQLDPPMVHSNLDSQAIHLTDDYAAKVSDFSYLNEIISADTKAGARKHTTDTTLTGNIHSFGVILLELVTGQLPYSAENGSLGEWMLPYLQGNRPLREIIDPTLLSFQEEQLQGITALIISCIDHDPQRRPTMKEVSERLRDITKITPDQAVPKLSPLWWAELEIASTNSMDAS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30215g00041 688 MobiDBLite consensus disorder prediction 225 329 - -
Stsc30215g00041 688 PANTHER PROTEIN MALE DISCOVERER 2 16 682 - -
Stsc30215g00041 688 SUPERFAMILY L domain-like 36 214 - -
Stsc30215g00041 688 FunFam Nuclear pore complex protein NUP107 33 191 - -
Stsc30215g00041 688 ProSiteProfiles Protein kinase domain profile. 395 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30215g00041 688 MobiDBLite consensus disorder prediction 288 323 - -
Stsc30215g00041 688 Gene3D Phosphorylase Kinase; domain 1 367 477 - -
Stsc30215g00041 688 MobiDBLite consensus disorder prediction 232 255 - -
Stsc30215g00041 688 Gene3D Transferase(Phosphotransferase) domain 1 478 666 - -
Stsc30215g00041 688 MobiDBLite consensus disorder prediction 273 287 - -
Stsc30215g00041 688 Pfam Leucine rich repeat 104 163 IPR001611 GO:0005515
Stsc30215g00041 688 SUPERFAMILY Protein kinase-like (PK-like) 378 654 IPR011009 -
Stsc30215g00041 688 MobiDBLite consensus disorder prediction 256 272 - -
Stsc30215g00041 688 FunFam Inactive receptor-like serine/threonine-protein kinase 369 477 - -
Stsc30215g00041 688 Pfam Leucine rich repeat N-terminal domain 34 76 IPR013210 -
Stsc30215g00041 688 Pfam Protein tyrosine and serine/threonine kinase 398 654 IPR001245 GO:0004672|GO:0006468
Stsc30215g00041 688 Gene3D Ribonuclease Inhibitor 32 230 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30215g00041 Stsc-Chr30215 308978 313129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30215g00041 113 658 Receptor kinase-like Gene Family AT5G49660 26.910 2.82e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Stsc30215g00041 PK_Tyr_Ser-Thr 1.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30215g00041 - - gmx:100784541 822.772