Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30215g00033 ATGGACGGTTCCACTAAGTCTCTGCTAGATTCATTGGTTAACATTTCCAATGAAGTTAGTTCAATGGAGAAGTCTCACTTTGTTCATGCAAGGAATGTTTCATCCATGATATGGCGGATCAAGCTTCTCTCTTCTATGCTTGAAGAGATTCAATTAACATGCTCTTCAATTCCTCCATCTTCAATCATGTCATTCAGTGAGATCTTGTCTTTGATTACAAAATCGAAGCATTTGATTCAACAATGCAAGGATGGCAGTTATCTGTGGAGTCTAATACAGTTAGAGTTCATATCCAACCAATTTTACTTGCTGGCAAAGGATATGGGAAATTCCCTTGATACCCTTCCCCTGAGTTTGCTTAGCATCACAAGAGATACACAAGAACAAGTGGAGCTTCTTCACAAACAAGCAAAGAGGGTCGAGTTGTTCATCGATCCTCGCGATCTTCAACAAAGAGACCGGCTTCTAGATGTGATGGCCAATAACGATTTACAAAACAAGAACTTCGCTGATGTTGGAAAAGTGGCAGAAATGTTGAGCAACATTGGTTTGAAAACTGCATCGGATTATGATAGGGAAATATCGAAGCTAGAGGCTGAAGCTCGGAATCAAGCTGGCACAGGAGGATTAATGGAAGTGTCTGATATCAAGAATCTGTTATTTCTGGTTTCATATTCCAAATCATTGATATTCAGGGGTGTAGAGAATGGAAGAAATGAAGCAGAGTTCCAGCCACTTTCAGAATTTCAACATATCAAAATTCATGATTTTTGTTCAGCAAGTTCTAAGTCCATGACACTAAATATTCGTGACGAATTTCGTTGCCCGATTTCGCTTGAGCTAATGAGGGACCCTGTGATTGTATCTTCTGGCCACAGCTATGATCGAGCTTCGATAGCACGGTGGATAAACTCCGGGCATCACACTTGCCCCAAAAGTGGACAAAGGTTAATTCACACTGCTCTAGTACCAAACTATGCATTGAAGAGTCTTATCCAGCAATGGTGCTATGAAAACAAGGTCTCAGTGAATGAGCCTAATTCATCTGTTTTGGAGGAAAACAGCAGACAGAGGAGCTTCAATGTGAATGCTGCTGATCATGCTTCTGCAAACAAAACATCTTTAGATGAGATCAAAATAACAGCAGAGTTTTTAGTTGGAAAACTGGCAACTGGCTCGGCCGACACCCAAAGGAAAGCTGCGTATAAACTCCGGTTGCTGGCAAAATGCGGAATGGACAGTCAAAGAATTATAGCTGAGGCCGGGGCTATTCCATTTCTAGTTACACTACTAACTTCCAATGATACAAGAATCCAGGAACAAGCGGTGACAGCTTTGTTAAACCTCTCCATCTTTGACAACAACAAGATTTTGATAATGGCAGCGAAGGGAGCAATTGAAAACATAATAGAAGTACTTGAATCTGGGAAGACAATGGAGGCAAGAGAAAATGCGGCAGCAGCAATTTTCAGCTTGACTATGATCGATGACAGCAAAGTAACAATTGGGGCTCATCCAAGGGCCATAAAGGCATTAGTTAAGCTCTTGAAAGAAGGCACTCCTATAGGAAAAAGAGATGCTGCTACTGCGATTTTCAATCTCGCAGTTTACCAAAGTAACAAGGCAACAATTGTGAATGCAGGGGCAGTTTCTGTGCTCATTGACATGCTGATGGATGACAAGGCCGGTATCACCGATGATGCATTGGCGGTGCTTGCTTCTCTTCTTGGTTGTTCTCAAGGGCTACAAGAGATAAGGAACAGCAGAGCATTGATTTCCATCCTTATTGAGCTTCTGAGGTTTGGTTCAGCCACAGGGAAGGAAAACTCAATAACACTTCTTCTTGGGTTATGCAAAGAAGAAGGCGAGGTCGTAGCAAGGCGTCTGTTAGTGAATCCGAGGAGCATTCCTTCTCTTCAGAGCTTGGCTGCTCATGGTTCGTTGAGAGCACGACGAAAGGCTGATGCATTGCTTCGCTTGCTGAATAGATGCTGCTCACAACCTCATCATTCTCTGTGA 2019 0.425 MDGSTKSLLDSLVNISNEVSSMEKSHFVHARNVSSMIWRIKLLSSMLEEIQLTCSSIPPSSIMSFSEILSLITKSKHLIQQCKDGSYLWSLIQLEFISNQFYLLAKDMGNSLDTLPLSLLSITRDTQEQVELLHKQAKRVELFIDPRDLQQRDRLLDVMANNDLQNKNFADVGKVAEMLSNIGLKTASDYDREISKLEAEARNQAGTGGLMEVSDIKNLLFLVSYSKSLIFRGVENGRNEAEFQPLSEFQHIKIHDFCSASSKSMTLNIRDEFRCPISLELMRDPVIVSSGHSYDRASIARWINSGHHTCPKSGQRLIHTALVPNYALKSLIQQWCYENKVSVNEPNSSVLEENSRQRSFNVNAADHASANKTSLDEIKITAEFLVGKLATGSADTQRKAAYKLRLLAKCGMDSQRIIAEAGAIPFLVTLLTSNDTRIQEQAVTALLNLSIFDNNKILIMAAKGAIENIIEVLESGKTMEARENAAAAIFSLTMIDDSKVTIGAHPRAIKALVKLLKEGTPIGKRDAATAIFNLAVYQSNKATIVNAGAVSVLIDMLMDDKAGITDDALAVLASLLGCSQGLQEIRNSRALISILIELLRFGSATGKENSITLLLGLCKEEGEVVARRLLVNPRSIPSLQSLAAHGSLRARRKADALLRLLNRCCSQPHHSL 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30215g00033 672 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 352 IPR013083 -
Stsc30215g00033 672 Pfam Armadillo/beta-catenin-like repeat 417 450 IPR000225 GO:0005515
Stsc30215g00033 672 SUPERFAMILY ARM repeat 383 661 IPR016024 -
Stsc30215g00033 672 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 507 549 IPR000225 GO:0005515
Stsc30215g00033 672 Gene3D - 382 661 IPR011989 -
Stsc30215g00033 672 SMART arm_5 453 494 IPR000225 GO:0005515
Stsc30215g00033 672 SMART arm_5 537 577 IPR000225 GO:0005515
Stsc30215g00033 672 SMART arm_5 411 451 IPR000225 GO:0005515
Stsc30215g00033 672 SMART arm_5 578 619 IPR000225 GO:0005515
Stsc30215g00033 672 SMART arm_5 496 536 IPR000225 GO:0005515
Stsc30215g00033 672 FunFam RING-type E3 ubiquitin transferase 268 342 - -
Stsc30215g00033 672 FunFam RING-type E3 ubiquitin transferase 478 665 - -
Stsc30215g00033 672 Pfam U-box domain 270 340 IPR003613 GO:0004842|GO:0016567
Stsc30215g00033 672 SUPERFAMILY RING/U-box 257 343 - -
Stsc30215g00033 672 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Stsc30215g00033 672 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
Stsc30215g00033 672 PANTHER U BOX DOMAIN-CONTAINING 32 666 - -
Stsc30215g00033 672 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Stsc30215g00033 672 CDD RING-Ubox_PUB 271 322 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30215g00033 Stsc-Chr30215 250007 252146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30215g00033 1 667 U-box Gene Family AT3G46510 37.097 2.60e-119 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30215g00033 - - gmx:100793498 897.501