LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30215g00033	ATGGACGGTTCCACTAAGTCTCTGCTAGATTCATTGGTTAACATTTCCAATGAAGTTAGTTCAATGGAGAAGTCTCACTTTGTTCATGCAAGGAATGTTTCATCCATGATATGGCGGATCAAGCTTCTCTCTTCTATGCTTGAAGAGATTCAATTAACATGCTCTTCAATTCCTCCATCTTCAATCATGTCATTCAGTGAGATCTTGTCTTTGATTACAAAATCGAAGCATTTGATTCAACAATGCAAGGATGGCAGTTATCTGTGGAGTCTAATACAGTTAGAGTTCATATCCAACCAATTTTACTTGCTGGCAAAGGATATGGGAAATTCCCTTGATACCCTTCCCCTGAGTTTGCTTAGCATCACAAGAGATACACAAGAACAAGTGGAGCTTCTTCACAAACAAGCAAAGAGGGTCGAGTTGTTCATCGATCCTCGCGATCTTCAACAAAGAGACCGGCTTCTAGATGTGATGGCCAATAACGATTTACAAAACAAGAACTTCGCTGATGTTGGAAAAGTGGCAGAAATGTTGAGCAACATTGGTTTGAAAACTGCATCGGATTATGATAGGGAAATATCGAAGCTAGAGGCTGAAGCTCGGAATCAAGCTGGCACAGGAGGATTAATGGAAGTGTCTGATATCAAGAATCTGTTATTTCTGGTTTCATATTCCAAATCATTGATATTCAGGGGTGTAGAGAATGGAAGAAATGAAGCAGAGTTCCAGCCACTTTCAGAATTTCAACATATCAAAATTCATGATTTTTGTTCAGCAAGTTCTAAGTCCATGACACTAAATATTCGTGACGAATTTCGTTGCCCGATTTCGCTTGAGCTAATGAGGGACCCTGTGATTGTATCTTCTGGCCACAGCTATGATCGAGCTTCGATAGCACGGTGGATAAACTCCGGGCATCACACTTGCCCCAAAAGTGGACAAAGGTTAATTCACACTGCTCTAGTACCAAACTATGCATTGAAGAGTCTTATCCAGCAATGGTGCTATGAAAACAAGGTCTCAGTGAATGAGCCTAATTCATCTGTTTTGGAGGAAAACAGCAGACAGAGGAGCTTCAATGTGAATGCTGCTGATCATGCTTCTGCAAACAAAACATCTTTAGATGAGATCAAAATAACAGCAGAGTTTTTAGTTGGAAAACTGGCAACTGGCTCGGCCGACACCCAAAGGAAAGCTGCGTATAAACTCCGGTTGCTGGCAAAATGCGGAATGGACAGTCAAAGAATTATAGCTGAGGCCGGGGCTATTCCATTTCTAGTTACACTACTAACTTCCAATGATACAAGAATCCAGGAACAAGCGGTGACAGCTTTGTTAAACCTCTCCATCTTTGACAACAACAAGATTTTGATAATGGCAGCGAAGGGAGCAATTGAAAACATAATAGAAGTACTTGAATCTGGGAAGACAATGGAGGCAAGAGAAAATGCGGCAGCAGCAATTTTCAGCTTGACTATGATCGATGACAGCAAAGTAACAATTGGGGCTCATCCAAGGGCCATAAAGGCATTAGTTAAGCTCTTGAAAGAAGGCACTCCTATAGGAAAAAGAGATGCTGCTACTGCGATTTTCAATCTCGCAGTTTACCAAAGTAACAAGGCAACAATTGTGAATGCAGGGGCAGTTTCTGTGCTCATTGACATGCTGATGGATGACAAGGCCGGTATCACCGATGATGCATTGGCGGTGCTTGCTTCTCTTCTTGGTTGTTCTCAAGGGCTACAAGAGATAAGGAACAGCAGAGCATTGATTTCCATCCTTATTGAGCTTCTGAGGTTTGGTTCAGCCACAGGGAAGGAAAACTCAATAACACTTCTTCTTGGGTTATGCAAAGAAGAAGGCGAGGTCGTAGCAAGGCGTCTGTTAGTGAATCCGAGGAGCATTCCTTCTCTTCAGAGCTTGGCTGCTCATGGTTCGTTGAGAGCACGACGAAAGGCTGATGCATTGCTTCGCTTGCTGAATAGATGCTGCTCACAACCTCATCATTCTCTGTGA	2019	0.425	MDGSTKSLLDSLVNISNEVSSMEKSHFVHARNVSSMIWRIKLLSSMLEEIQLTCSSIPPSSIMSFSEILSLITKSKHLIQQCKDGSYLWSLIQLEFISNQFYLLAKDMGNSLDTLPLSLLSITRDTQEQVELLHKQAKRVELFIDPRDLQQRDRLLDVMANNDLQNKNFADVGKVAEMLSNIGLKTASDYDREISKLEAEARNQAGTGGLMEVSDIKNLLFLVSYSKSLIFRGVENGRNEAEFQPLSEFQHIKIHDFCSASSKSMTLNIRDEFRCPISLELMRDPVIVSSGHSYDRASIARWINSGHHTCPKSGQRLIHTALVPNYALKSLIQQWCYENKVSVNEPNSSVLEENSRQRSFNVNAADHASANKTSLDEIKITAEFLVGKLATGSADTQRKAAYKLRLLAKCGMDSQRIIAEAGAIPFLVTLLTSNDTRIQEQAVTALLNLSIFDNNKILIMAAKGAIENIIEVLESGKTMEARENAAAAIFSLTMIDDSKVTIGAHPRAIKALVKLLKEGTPIGKRDAATAIFNLAVYQSNKATIVNAGAVSVLIDMLMDDKAGITDDALAVLASLLGCSQGLQEIRNSRALISILIELLRFGSATGKENSITLLLGLCKEEGEVVARRLLVNPRSIPSLQSLAAHGSLRARRKADALLRLLNRCCSQPHHSL	672

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30215g00033	672	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	250	352	IPR013083	-
	Stsc30215g00033	672	Pfam	Armadillo/beta-catenin-like repeat	417	450	IPR000225	GO:0005515
	Stsc30215g00033	672	SUPERFAMILY	ARM repeat	383	661	IPR016024	-
	Stsc30215g00033	672	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	507	549	IPR000225	GO:0005515
	Stsc30215g00033	672	Gene3D	-	382	661	IPR011989	-
	Stsc30215g00033	672	SMART	arm_5	453	494	IPR000225	GO:0005515
	Stsc30215g00033	672	SMART	arm_5	537	577	IPR000225	GO:0005515
	Stsc30215g00033	672	SMART	arm_5	411	451	IPR000225	GO:0005515
	Stsc30215g00033	672	SMART	arm_5	578	619	IPR000225	GO:0005515
	Stsc30215g00033	672	SMART	arm_5	496	536	IPR000225	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30215g00033	Stsc-Chr30215	250007	252146	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30215g00033	1	667	U-box Gene Family	AT3G46510	37.097	2.60e-119	369

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30215g00033	-		-	gmx:100793498	897.501

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