Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30215g00031 ATGAAGGGTTATGAGCCTCGTTCAAGCTCTTCTTGTGCAGCCTGCAAGTTACTCAAGAGAAGATGCATACCCAACTGCATCTTCGCTCCTTACTTTCGTTCCGACGAGTGCAAGAAATTTGCCAAAGTTCACAAGGTTTTTGGTGCCAGTAATATCAGCAAGATCCTCATTGAGGTCCCTGAAGAACAAAGAGAGGACACCGTGAATTCCCTCACATACGAGGCTGAGGCTAGGCTCCGTGACCCCGTTTACGGGTGCATTGGAGCCATAGCGCTCCTTCAGAGGAAGATGATAGAGCTACAGCACGATCTGGCGATCGCTAAGGATCGCCTGGCTCGTGTAGTAGCTTCTACTACTTCTGTCTCCGATTCTGTTATGGACGCTACTACTACTGTCAGTAGTAATAGCGACAATCTCATGCATGGTTCTTCTTCTTCGCATGTTAGCTTGCCCCCTTTTCCTTGCAGTGATTTCAGTGATAGCTTCTGCCATAGTTCTTCTTCTTCATCCCAATTCTTGACCCGGCATGATCAAGCGGTTGATGATTTCACTCAAATTCCATACATATTTTAA 573 0.466 MKGYEPRSSSSCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNISKILIEVPEEQREDTVNSLTYEAEARLRDPVYGCIGAIALLQRKMIELQHDLAIAKDRLARVVASTTSVSDSVMDATTTVSSNSDNLMHGSSSSHVSLPPFPCSDFSDSFCHSSSSSSQFLTRHDQAVDDFTQIPYIF 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30215g00031 190 Coils Coil 90 110 - -
Stsc30215g00031 190 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Stsc30215g00031 190 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Stsc30215g00031 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30215g00031 Stsc-Chr30215 229382 230038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30215g00031 1 111 AS2 family AT3G11090 79.279 4.81e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc30215g00031 LOB 3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30215g00031 - - aip:107608172 258.84