Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30215g00029 ATGCACCGAGGAGACCATTATTGGAAGGGGACGTTCACTGTCTTGGTAGATAATCTACCGGAGAGAATAACTAAGAGGGCTCTATTCAAAGAGTTTGGGAAGGATGGATATATTACGGATATCTTCATCTCTAAGAAGGTACGCCAGAATGCCAAGGGACGATTTGCATTCATAAGGTTCAACTCATATGGTGGAGCTATGAAGTTCATAAACAGGATGAATGGAAGGAGATGGGAGGAGTTTGACCTGCATGTTGAGCTATCAAGGTTTGACAGATACCACAAGAAGCTGGAGAATCCCGATGCCATGAACCAGAATCACAGGAAGAAAAGGATTGCGGAGGATCAGAGGGACAGACTTCGGAGGAGCTTACTTGGCTGCAGTGTGAAACCCATTGAGTTTAGAAAAGTGATGAACCTTCTTATTGATGAATGGAAAGGAGAAGGTGATATTGAATGCAGGGATGTTGGCCCTTATCGGTGCCTGGTAACCTTTTCATCCCCAGATATAAGGGATAAAGCGTTCCATGAGCCCTTACTACTCTCTGTTTTTGATGAACTAAGGTCACATTGGGATATCTTCTAG 585 0.4393 MHRGDHYWKGTFTVLVDNLPERITKRALFKEFGKDGYITDIFISKKVRQNAKGRFAFIRFNSYGGAMKFINRMNGRRWEEFDLHVELSRFDRYHKKLENPDAMNQNHRKKRIAEDQRDRLRRSLLGCSVKPIEFRKVMNLLIDEWKGEGDIECRDVGPYRCLVTFSSPDIRDKAFHEPLLLSVFDELRSHWDIF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30215g00029 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Stsc30215g00029 194 SUPERFAMILY RNA-binding domain, RBD 10 95 IPR035979 GO:0003676
Stsc30215g00029 194 SMART rrm1_1 13 86 IPR000504 GO:0003723
Stsc30215g00029 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 78 IPR000504 GO:0003723
Stsc30215g00029 194 Gene3D - 8 124 IPR012677 -
Stsc30215g00029 194 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 13 136 - -
Stsc30215g00029 194 CDD RRM_SF 14 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30215g00029 Stsc-Chr30215 225683 226369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30215g00029 11 117 Eukaryotic Initiation Factors Gene Family AT1G71770 31.481 3.71e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30215g00029 - K12891 ahf:112794598 117.087