Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30215g00016 ATGGAGAATTGTGATCACAATTCTAGTTGTTCTTCATTTCTAGACCCTTCACAAACATTGCCTCATGTCTCTTATTGTGATTCTCTTCATCATCACTTTCATGGTGAGTTTCATCCGTGGCCTGCACCGCTCGAAATGGTGGCCGGAGACAAAGCCGCTATGGCTTCCAAGAGCCATAGTCAGGCCGAGAAGCGGCGGAGGGATCGGATCAATGCACAGCTTACAAGTCTCAGGAAACTAATTCCCAAATCTGACAAGATGGACAAGGCAGCTTTACTAGGAAGCGTGATAGAGCGAGTGAAGGATCTAAAGAGAAATGCAATGGAAGTTAGCAACGCCATAACGGTTCCAACCGAAACCGACGAAATAACAATTGAGTATGACCATAATGCACATGATGAGAGCCTAAAATTGAAGGACAACGTTGTGATTAAGGCATCGGTTTGCTGCGACGATCGGCCGGAGCTGTTCTCGGAACTCATCCATGTCCTCAAACGGTTAAGGCTCACGGCAGTTAAAGCTGAGATAGCAAGTGTTGGAGGAAGAATGAAAGGCACATTGTTGCTTTGTTCTAAGGATAGTGAAAAGGGTGTTTGTCTCAGTAATCTCAAGCATTCCCTAAAATCAGTTGTGACAAAAATGGCCTCATCTTCCGTTGCAACAAATTGCCCTACTAGAAGTAAGAGGCAAAGTCAGAGTGCCGCGTCTGATGATTCCATAGTGAAGGATCAATCGGTAGAATTGGTGGCGATGAATCCCCATGAGGATGGAGAACAAGAGGGCGAAACAATGTTTCCAGATGAGATTTGGAATGAGTGGAATTTTGGGAATAAAAACAAGTATCCTGCGTTTTTTAATTCTAAGGTAGATAAGGAGTTTAATAGAAGTGAGAGTGATCGCTCGGATCAAACACTTACTTAG 921 0.4408 MENCDHNSSCSSFLDPSQTLPHVSYCDSLHHHFHGEFHPWPAPLEMVAGDKAAMASKSHSQAEKRRRDRINAQLTSLRKLIPKSDKMDKAALLGSVIERVKDLKRNAMEVSNAITVPTETDEITIEYDHNAHDESLKLKDNVVIKASVCCDDRPELFSELIHVLKRLRLTAVKAEIASVGGRMKGTLLLCSKDSEKGVCLSNLKHSLKSVVTKMASSSVATNCPTRSKRQSQSAASDDSIVKDQSVELVAMNPHEDGEQEGETMFPDEIWNEWNFGNKNKYPAFFNSKVDKEFNRSESDRSDQTLT 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30215g00016 306 CDD bHLH_AtAIG1_like 50 125 - -
Stsc30215g00016 306 PANTHER TRANSCRIPTION FACTOR BHLH30 34 232 IPR045847 GO:0003700|GO:0006355
Stsc30215g00016 306 Pfam Helix-loop-helix DNA-binding domain 57 103 IPR011598 GO:0046983
Stsc30215g00016 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 106 IPR036638 GO:0046983
Stsc30215g00016 306 CDD ACT_UUR-ACR-like 147 182 - -
Stsc30215g00016 306 MobiDBLite consensus disorder prediction 219 240 - -
Stsc30215g00016 306 Gene3D - 49 112 IPR036638 GO:0046983
Stsc30215g00016 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 103 IPR011598 GO:0046983
Stsc30215g00016 306 SMART finulus 60 109 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30215g00016 Stsc-Chr30215 131519 133056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30215g00016 33 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 46.829 1.01e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30215g00016 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30215g00016 - - adu:107469423 377.096