Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30214g00040 ATGGATCGGATTAAGGGCCCGTGGAGCCCGGAGGAGGACCAGACGTTGAGGAGGCTTGTGGAAGCCCACGGCCCGAGAAACTGGACTATTATCAGCAAGTCCATTCCAGGCCGATCCGGCAAGTCGTGCCGGTTGCGGTGGTGCAACCAGCTGTCACCGGAGGTGGAGCACCGCGCATTCACGGCGGAGGAGGACGATATCATCGTCAGAGCCCACTCCGAGTTCGGAAACAAGTGGGCCACGATAGCCCGGTTACTTAACGGAAGAACCGATAACGCCGTCAAGAATCACTGGAACTCTACGCTCAAGAGGAAATGCCGCTCTTCTGCTTCTGACGCCGTTACCGTCGCCGTTTACCCTGACGCGCAGCCTCTTAAAAGATCCGCCAGTGTTGGCCCGGGCCACGTTACCACGCCAAGCAGCCCGTCGGGCTCTGAACTCAGCGATCCTGGGCTTCCCTCTCTATCGGCCCCGGGCTCGGGCTCGGATCCAAGAACGTTGCTGAGCTTGTCGCTTCCGGGATCGGGATCAGGATCAGATTCGAGTAAAGACGGGCCTGGGTGTGGGCTTTCACCTGAGCCTGACCCGGCCCAAATGTTCAGCCCGGAGTTCTTGGCGATGATGCAAGAAATGGTGAGGAGAGAGGTTCGGAGTTACATGTCGATGGTTGAACAGAACGGGGTTCGCATGCAGCACACGGAAGCCATTCGAAACGGTGTTTTGAAACGAACGGGAATTAGAAACGGTTTAGAGAGGTAA 759 0.5758 MDRIKGPWSPEEDQTLRRLVEAHGPRNWTIISKSIPGRSGKSCRLRWCNQLSPEVEHRAFTAEEDDIIVRAHSEFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCRSSASDAVTVAVYPDAQPLKRSASVGPGHVTTPSSPSGSELSDPGLPSLSAPGSGSDPRTLLSLSLPGSGSGSDSSKDGPGCGLSPEPDPAQMFSPEFLAMMQEMVRREVRSYMSMVEQNGVRMQHTEAIRNGVLKRTGIRNGLER 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30214g00040 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Stsc30214g00040 252 CDD SANT 7 49 IPR001005 -
Stsc30214g00040 252 MobiDBLite consensus disorder prediction 159 184 - -
Stsc30214g00040 252 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Stsc30214g00040 252 MobiDBLite consensus disorder prediction 125 198 - -
Stsc30214g00040 252 Gene3D - 58 117 - -
Stsc30214g00040 252 PANTHER MYB PROTEIN-RELATED 5 143 - -
Stsc30214g00040 252 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
Stsc30214g00040 252 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Stsc30214g00040 252 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Stsc30214g00040 252 SMART sant 4 53 IPR001005 -
Stsc30214g00040 252 SMART sant 56 104 IPR001005 -
Stsc30214g00040 252 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Stsc30214g00040 252 CDD SANT 59 102 IPR001005 -
Stsc30214g00040 252 MobiDBLite consensus disorder prediction 133 150 - -
Stsc30214g00040 252 FunFam MYB transcription factor 5 56 - -
Stsc30214g00040 252 Gene3D - 4 56 - -
Stsc30214g00040 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30214g00040 Stsc-Chr30214 342695 344269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30214g00040 1 228 MYB Transcription Factor Family AT4G37260 51.087 2.70e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30214g00040 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30214g00040 K09422 - gmx:778174 279.256