Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30214g00036 ATGGCACATCATCATGATCATGATCAAGAACACAACAACATAGATTCTTCTTCTTTGTACTGCTTAGAACAACATCATTTTGATGATGATGTTGATGAGGAACATGTGTTTCTAGAACAGGACATGTTCTGTGATGATTCAGAGTTGAAAACTCTTCTATCCAAAGAAGAAGAACAAGAAGTCATTGATGATGATGATGATTCAGAGTTATTGGAAAGAAGAGAAGCAGTGGAATGGATTGTGAGAGTGAATGAAAATTACTCATTCACTGCTCTCACAGCTTCTCTTGCTGTAAGCTACCTTCACAGGTTCCTCTTAAGCTTGAAGAAGAAGAAGCAGCAGCAGCCATGGTTGACACACCTTGCTGCTGTTGCTTGCATCTCTCTTGCTGCTAAACTTCAAGAGACACAAGCTCCTCTCCCTATTGACTTACAAGTGGAGGACAGCAAATATGTGTTTGAGGCAAAATCCATAATGAAAATGGAGATTTTGGTACTTTCAAGTCTTGAGTGGAAGATGAATCCAGCAACACCTCTCTCTTTCATTGATTACATCACAAGAAGACTTAAATTGAAGTGTTTTCTTTCTTTTCACTTCCTCAACACATGTGAAGCTCTTCTTCTTTCTCTCTTACCAGATTCCAGGTTTATTGGTTTTCTTCCTTCTGTGTTGGCAACTGCTACAATGATGCATGTATTTAACAATGTGAAGCCTTCTTTAGCATCTGAATACCAAAATCAGATCTTGGCTATTCTTGGAATAAATAAGGGAAAGTTAGAAGAATGCTACAATATGATATTGGAGGTTGTATCATCAGAATCAGGGTACAAATACAAACAATCCACCAAGAAACGCAATTTTGGATCATCATCAATTATTCCAAGTAGCCCAAGTGGTGTAATTGATGTCTCATTTAGCTCTAATGATGATCATGATCATGATGATACCTCTAATAATGATTCTTTGGAATCATTAGTATCTGCTAATAATAATGATTCTTTTTCATCATCACCAAACAACACCAACAACAACAAGAAGCCTAGGACTCAAGAACATACTTCAGCTTCCATTCAACAATTCAAGCAATGA 1089 0.371 MAHHHDHDQEHNNIDSSSLYCLEQHHFDDDVDEEHVFLEQDMFCDDSELKTLLSKEEEQEVIDDDDDSELLERREAVEWIVRVNENYSFTALTASLAVSYLHRFLLSLKKKKQQQPWLTHLAAVACISLAAKLQETQAPLPIDLQVEDSKYVFEAKSIMKMEILVLSSLEWKMNPATPLSFIDYITRRLKLKCFLSFHFLNTCEALLLSLLPDSRFIGFLPSVLATATMMHVFNNVKPSLASEYQNQILAILGINKGKLEECYNMILEVVSSESGYKYKQSTKKRNFGSSSIIPSSPSGVIDVSFSSNDDHDHDDTSNNDSLESLVSANNNDSFSSSPNNTNNNKKPRTQEHTSASIQQFKQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30214g00036 362 CDD CYCLIN_AtCycD-like_rpt1 73 171 - -
Stsc30214g00036 362 CDD CYCLIN_AtCycD-like_rpt2 177 266 - -
Stsc30214g00036 362 Gene3D - 175 265 - -
Stsc30214g00036 362 FunFam D6-type cyclin 58 174 - -
Stsc30214g00036 362 Pfam Cyclin, N-terminal domain 56 174 IPR006671 -
Stsc30214g00036 362 Gene3D - 69 174 - -
Stsc30214g00036 362 SUPERFAMILY Cyclin-like 45 174 IPR036915 -
Stsc30214g00036 362 Pfam Cyclin, C-terminal domain 177 289 IPR004367 -
Stsc30214g00036 362 MobiDBLite consensus disorder prediction 303 362 - -
Stsc30214g00036 362 SMART Cyclin_C_2 176 296 IPR004367 -
Stsc30214g00036 362 SMART cyclin_7 78 167 IPR013763 -
Stsc30214g00036 362 PANTHER CYCLINS 50 278 IPR039361 -
Stsc30214g00036 362 MobiDBLite consensus disorder prediction 320 362 - -
Stsc30214g00036 362 SUPERFAMILY Cyclin-like 158 271 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30214g00036 Stsc-Chr30214 294350 297024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30214g00036 7 310 Core Cell Cycle Gene Families AT4G34160 44.795 2.32e-83 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30214g00036 K14505 - aprc:113874132 289.271