Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30214g00015 ATGAACTCCTTCACTTCCACTCTTCTCAACCAACCAAATCCAACGCCACTCAACAAACTCCACTTCTTCCACTCCCACTCTCACTCTCACTCTCACTCTCTCTCATTCTTCTTCCCACACACACCAAACCTCAAATGCCGCCATCAGAAACCAACCATAACAGCATGCTCTTCTTCTTCAATCGAAATCGACATGGTGAAGAACAACCATGGAATCTACACTCCTAAGCACCCCAAAGTAGTTGTCCTCTGGGACCTCGACAACAAACCACCGCGCGGACCACCGTACGACGCCGCACGCTCCCTCACGCGCGTCGCGAGCCACTTCGGCGACGTCGTCGAGATCTCCGCCTACGCTAACCGCCATGCGTTCATCCACCTCCCGCAGTGGGTCCTACAGGAGCGCCGGCAGAGGAAGAACCTGGACGTGCTGGAACGGAAGGGGGTGGTGGTGCCGTCGGAGCCGTACAGGTGCTCCGTGTGCGGGAGGAAGTGCCGGACGAATCTTGATCTGAAGAAGCATTTCAGGCAGTTGCATGAACGTGAGAGGCAGAAGAAGCTTAATCGGATGAGGTCGTTGAAAGGGAAGAAACGGCAGCGTTTTAAGGAGAGGTTTATTTCAGGGAATGAGAAGTATAATGAGGCTGCTAGGTCTCTCATTAGGCCCAAGGTTGGTTATGGGCTAGCTTCGGAGCTAAGGAGGGCTGGGGTATATGTGAAGACTGTGGAAGATAAGCCTCAGGCTGCAGATTGGGCATTGAAGAGGCAGATGCAGCACTCAATGACCAGGGGAATTGATTGGCTGGTTTTGGTTTCAGATGATTCGGATTTTGCGGAGATGCTAAGGAGAGCAAGAGAGAGGGAATTGGGGACAGTGGTGGTTGGGGATTGGGACAGGGCGCTGGGGAGGCACGCCGATTTGTGGTTTCCTTGGATTGATGTTGAGCATGGGAATGTCTCAGAGAAGGATCTGGTGATCGAGAAGAACAGGAGTAAGGCTCGAAGGGACGGTTTTGTTGTTGAAGAAGATGATGATGGGTTTTTTTCACTGTCGAGGTTTGACAGTGGTGGTGGTCGTGGGAGTAGTGATTTGGATGAGCTTGTGGATGAACTTGCAGGAGTAAGGACTGATTTTACTGCGGCAATTTCAGATGAGGATGAAGACGATTATATGTTGGGAAGTAGTGACGATGAGTTCATAGAAGATTATGATGAAGACGATGATCAAGAAGAGGATGATGGATTCTATTGA 1251 0.5084 MNSFTSTLLNQPNPTPLNKLHFFHSHSHSHSHSLSFFFPHTPNLKCRHQKPTITACSSSSIEIDMVKNNHGIYTPKHPKVVVLWDLDNKPPRGPPYDAARSLTRVASHFGDVVEISAYANRHAFIHLPQWVLQERRQRKNLDVLERKGVVVPSEPYRCSVCGRKCRTNLDLKKHFRQLHERERQKKLNRMRSLKGKKRQRFKERFISGNEKYNEAARSLIRPKVGYGLASELRRAGVYVKTVEDKPQAADWALKRQMQHSMTRGIDWLVLVSDDSDFAEMLRRARERELGTVVVGDWDRALGRHADLWFPWIDVEHGNVSEKDLVIEKNRSKARRDGFVVEEDDDGFFSLSRFDSGGGRGSSDLDELVDELAGVRTDFTAAISDEDEDDYMLGSSDDEFIEDYDEDDDQEEDDGFY 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30214g00015 416 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 184 IPR013087 -
Stsc30214g00015 416 Coils Coil 176 196 - -
Stsc30214g00015 416 SMART c2h2final6 156 179 IPR013087 -
Stsc30214g00015 416 MobiDBLite consensus disorder prediction 385 416 - -
Stsc30214g00015 416 CDD PIN_LabA-like 166 296 - -
Stsc30214g00015 416 ProSitePatterns Zinc finger C2H2 type domain signature. 158 179 IPR013087 -
Stsc30214g00015 416 Gene3D - 73 313 - -
Stsc30214g00015 416 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 40 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30214g00015 Stsc-Chr30214 107388 110769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30214g00015 12 351 C2H2 Transcription Factor Family AT5G52010 67.529 7.16e-162 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30214g00015 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30214g00015 - - adu:107495834 661.759