Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30214g00014 ATGGAAGATAAGGATGATTTTGGTTCAACAAGAGATAGAAGTAGAAGCAGGAGCAGAAGTCCTGTTAATAAGAAGCCGAAGATTGAAAGCGAGAAGCCAAACAAACACTACAGAGGAGTAAGGATGAGGAAGGGGGGGAATTGGGTAGCGGAGGTTAGAGAACCTAAGAACAGGACAAGAACATGGTTAGGCTCCTACATGACACCAGAAGCGGCCGCCCGAGCATACGACACGGCTGCGTTCTCCTTTCGGGGGTCATTGGCCCGGCTCAACTTCCCGGAGTTGTTGTTCCAAGATCAAGAGAAGAAAGATGGTGATGGTTGTTTGTTACAACAAGGTGACATGTCAATTGATTCCATAAGAAAAAGAGCAATGCAAGTTGGAGAAAGAGTTGATGCTATTCAAACAGCACTTAATCATGCATCATCTTCCAACCATAATTGTTCAACTAGTACTCCCTCTCCTAAACCTGATGAGAAGCCAAACAAACCCTACAAAGGAATAATGATGGGGAAGTGGGGGAAATGGGTAGCGGAGATTAGAGAACCTAAGAACATGTCAAGGATATGGTTAGGCTCCTACATGACACCAGTGGCAGCCGCCCGAGCATACGACACGGCTGTCTTCTCCCTTTGGGGGCAGTCGGCCCAGCTCAACTTCCCGGAGTTGTTCCAAGATCAAGAGAAGAAAGATGAAATGTCAATTGATTCCATAAGAAAAATAGCAATGCAAGTTGGAGAAGGAGAGGATGCTATTCAAACAGCACTACTTAATAATCATGCATCTTCCAACCATAATTCTTCAACTACTCCTCCCTCAGTCCCTCAGAAACCTGATGCATTATGA 846 0.4527 MEDKDDFGSTRDRSRSRSRSPVNKKPKIESEKPNKHYRGVRMRKGGNWVAEVREPKNRTRTWLGSYMTPEAAARAYDTAAFSFRGSLARLNFPELLFQDQEKKDGDGCLLQQGDMSIDSIRKRAMQVGERVDAIQTALNHASSSNHNCSTSTPSPKPDEKPNKPYKGIMMGKWGKWVAEIREPKNMSRIWLGSYMTPVAAARAYDTAVFSLWGQSAQLNFPELFQDQEKKDEMSIDSIRKIAMQVGEGEDAIQTALLNNHASSNHNSSTTPPSVPQKPDAL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30214g00014 281 ProSiteProfiles AP2/ERF domain profile. 164 221 IPR001471 GO:0003700|GO:0006355
Stsc30214g00014 281 FunFam Ethylene-responsive transcription factor 2 163 222 - -
Stsc30214g00014 281 Pfam AP2 domain 165 213 IPR001471 GO:0003700|GO:0006355
Stsc30214g00014 281 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Stsc30214g00014 281 MobiDBLite consensus disorder prediction 139 156 - -
Stsc30214g00014 281 MobiDBLite consensus disorder prediction 257 275 - -
Stsc30214g00014 281 SUPERFAMILY DNA-binding domain 165 222 IPR016177 GO:0003677
Stsc30214g00014 281 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 16 148 - -
Stsc30214g00014 281 MobiDBLite consensus disorder prediction 1 44 - -
Stsc30214g00014 281 PRINTS Ethylene responsive element binding protein signature 75 95 IPR001471 GO:0003700|GO:0006355
Stsc30214g00014 281 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Stsc30214g00014 281 MobiDBLite consensus disorder prediction 257 281 - -
Stsc30214g00014 281 CDD AP2 165 223 IPR001471 GO:0003700|GO:0006355
Stsc30214g00014 281 CDD AP2 35 95 IPR001471 GO:0003700|GO:0006355
Stsc30214g00014 281 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Stsc30214g00014 281 MobiDBLite consensus disorder prediction 1 36 - -
Stsc30214g00014 281 FunFam Ethylene-responsive transcription factor 2 35 94 - -
Stsc30214g00014 281 SMART rav1_2 164 227 IPR001471 GO:0003700|GO:0006355
Stsc30214g00014 281 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Stsc30214g00014 281 Gene3D AP2/ERF domain 164 222 IPR036955 GO:0003700|GO:0006355
Stsc30214g00014 281 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Stsc30214g00014 281 MobiDBLite consensus disorder prediction 139 165 - -
Stsc30214g00014 281 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30214g00014 Stsc-Chr30214 104682 106766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30214g00014 160 259 AP2-EREBP Transcription Factor Family AT5G67190 63.366 1.20e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc30214g00014 AP2 1.3e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30214g00014 K09286 - gmx:100801528 150.214