Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30214g00013 ATGGAAGATAGGGATTATTTTTGTTCAACAAACTCAGGAAGAGATGGAATTAGAAGTAAAAGCAAAAATAGAAGTCTTGTTAAGACGAAACCGAAGATTCAAAGAGAGAAACAACCAAACAAACCCTGGAAAGGAATAAGGATGAGGAAGTGGGGGAAATGGGTAGCGGAGATTAGAGAACCTAACAAGAGGTCAAGGATATGGTTAGGCTCCTACATGACACCGGTGGCGGCCGCGCGAGCGTATGACACGGCCGTGTTCTATCTTCGGGGCCCGTCCGCCCGACTCAACTTCCCAGAGTTGTTGTTCCAAGATCAAGAAAGGAAGGACGACGACGACGACGATGGTGGCAGTTCTTGTTTGTTACAACAAGAATGTGACATGTCAGCTGATTTCATAAGAAAAAGAGCAACACAAGTTGGAGCAAGAGTTGATGCTATTCAAACAGCACTTATCAATCATGTATCTTCCAACCATAATTGTTCAACTACTACTCCTTCTCTTCTCCTTCAGAAACCTGATTTAAATGAGTTTCCAAAACCTGATGATGAAGAAGATTATTCCCTTCACGTTTAG 576 0.4288 MEDRDYFCSTNSGRDGIRSKSKNRSLVKTKPKIQREKQPNKPWKGIRMRKWGKWVAEIREPNKRSRIWLGSYMTPVAAARAYDTAVFYLRGPSARLNFPELLFQDQERKDDDDDDGGSSCLLQQECDMSADFIRKRATQVGARVDAIQTALINHVSSNHNCSTTTPSLLLQKPDLNEFPKPDDEEDYSLHV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30214g00013 191 Pfam AP2 domain 44 91 IPR001471 GO:0003700|GO:0006355
Stsc30214g00013 191 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Stsc30214g00013 191 MobiDBLite consensus disorder prediction 172 191 - -
Stsc30214g00013 191 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Stsc30214g00013 191 MobiDBLite consensus disorder prediction 176 191 - -
Stsc30214g00013 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 27 185 - -
Stsc30214g00013 191 FunFam Ethylene-responsive transcription factor 2 41 100 - -
Stsc30214g00013 191 CDD AP2 44 101 IPR001471 GO:0003700|GO:0006355
Stsc30214g00013 191 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Stsc30214g00013 191 MobiDBLite consensus disorder prediction 1 41 - -
Stsc30214g00013 191 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Stsc30214g00013 191 PRINTS Ethylene responsive element binding protein signature 81 101 IPR001471 GO:0003700|GO:0006355
Stsc30214g00013 191 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30214g00013 Stsc-Chr30214 96779 97354 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30214g00013 33 185 AP2-EREBP Transcription Factor Family AT2G23340 53.416 8.08e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc30214g00013 AP2 7.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30214g00013 K09286 - gmx:547642 205.297