Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30214g00011 ATGGCGCAGATTCAGGTTCAGCACCAGAGCGCGGTTTCTGGTCCGCCGCAGAACGGCGTCGCGGCCGCTCCTTCGCCTGCGGCGGCGGCGGGTGCTGCGAATGCGACGAACCAGTTTGTTACGACGTCATTGTACGTCGGGGATCTGGACTTTGAGGTTGAGTGGAGGCACCTCTACGATTTGTTCAACCAGGTCGGACAAGTGGTTTCGGTTCGTGTCTGCAGTGACTTGACCACTCGCCGATCGCTCGGTTACGGTTACGTTAATTACAGTAACCCTCAGGATGCTGCAAGAGCAATTGATGTACTGAACTTCACTCCACTGAACAACAAGCCCATTAGGATCATGTATTCTCATAGGGATCCTAGCATTCGCAAGAGTGGGACTGCAAATATTTTTATCAAGAATTTGGATAAGGCAATTGATCACAAAGCTTTACATGATACTTTTACTTCTTTTGGACATATTCTTTCTTGCAAAATAGCGACTGATGCTTCTGGCCAGTCAAAAGGCTATGGTTTTGTTCAATTCGAAAGCGAAGAGTCTGCACAGAATGCAATTGATAAGTTAAATGGCATGCTGCTCAATGATAAGCAGGTCTATGTAGGTCATTTCTTACGTAAGCAAGATAGAGATAATGCTTTGAATGGTAAATCAAAGTGTTTTGGGTTTGTTAATTTTGAAAACCCAGAAGATGCTGCCAAAGCTGTTGAGGCACTCAATGGAAAGAAAATTGATGACAAGGAATGGTATGTTGGAAAGGCCCAGAAAAAATCTGAGCGAGAGAATGAACTGAGAAGACGGTTTGAGCAAACTGTTAAGGAATCGGTTGATAAATACCAAGGTGTGAACTTGTATCTCAAGAACTTGGATGATACCATCAATGATGAAAAGCTTAGAGAACTCTTCTCCGAGTTTGGTTCAATAACCTCCTGCAAGGTGATGCGTGATCCAAATGGAATCAGTAGAGGATCAGGATTTGTTGCATTTTCAACTCCTGAGGAAGCATCTCGAGCTCTTACGGAGATGAATGGTAAAATGATTGCTGGGAAGCCTCTGTATGTTGCCCTTGCCCAGAGAAAGGAAGAGAGAAGAGCTAGGTTACAGGCACAATTTTCACAAATGAGGCCTGTTGCAATGACAACTTCTGTTGCACCTAGGATGCCACTTTATCCTCCTGGTGCTCCTGGTTTAGGGCAACAATTTTTGTATGGGCAAGGACCCCCAGCCATGATTTCCCCACAGGCTGGATTTGGCTACCAGCAGCAACTTGTTCCTGGGATGAGGCCTGGTGGTGCTCCAATGCCTAGCTTCTTTGTTCCAATGGTTCAGCAAGGTCAGCGCCCAGGTGGACGAAGGGGAGCTGGTCCTGTGCAACAACCCCAGCAGCCAGTGCCAATGATGCAGCAACAGTTGCTTCCAAGGGGACGCTACGTGCGTTACCCCGGGGGTCGCAACATGCAAGATGTCCCACATCCAGGAGTTCCTGGAGGAATGTTGTCAGTCCCCTACGACATGGGTGGTCTTCCAATCCGCGATGGTGTAGGGCAGCCAGTCGGCATTCAGGCCTTGGCTACTGCTCTTGCAAATGCTCCTCCGGAACAGCAGAGGACTATGCTTGGTGAAGCTCTGTACCCGCTAGTGGACCAGCTGGAGCATGACGCAGCAGCTAAAGTTACAGGCATGCTATTGGAGATGGATCAGCCAGAGGTATTGCACCTGATTGAATCACCAGATGCTCTCAAGGCGAAAGTTACCGAAGCGATGGATGTGTTGAGAAATGTTTCTCAACAAGCCAACAGTCCTGCCGATCAACTAGCTTCACTCTCGCTCAATGAGAATCTTGTCTCTTAG 1854 0.48 MAQIQVQHQSAVSGPPQNGVAAAPSPAAAAGAANATNQFVTTSLYVGDLDFEVEWRHLYDLFNQVGQVVSVRVCSDLTTRRSLGYGYVNYSNPQDAARAIDVLNFTPLNNKPIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFTSFGHILSCKIATDASGQSKGYGFVQFESEESAQNAIDKLNGMLLNDKQVYVGHFLRKQDRDNALNGKSKCFGFVNFENPEDAAKAVEALNGKKIDDKEWYVGKAQKKSERENELRRRFEQTVKESVDKYQGVNLYLKNLDDTINDEKLRELFSEFGSITSCKVMRDPNGISRGSGFVAFSTPEEASRALTEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAMTTSVAPRMPLYPPGAPGLGQQFLYGQGPPAMISPQAGFGYQQQLVPGMRPGGAPMPSFFVPMVQQGQRPGGRRGAGPVQQPQQPVPMMQQQLLPRGRYVRYPGGRNMQDVPHPGVPGGMLSVPYDMGGLPIRDGVGQPVGIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVTEAMDVLRNVSQQANSPADQLASLSLNENLVS 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30214g00011 617 Gene3D - 212 263 IPR012677 -
Stsc30214g00011 617 SMART rrm1_1 204 253 IPR000504 GO:0003723
Stsc30214g00011 617 SMART rrm1_1 43 116 IPR000504 GO:0003723
Stsc30214g00011 617 SMART rrm1_1 284 356 IPR000504 GO:0003723
Stsc30214g00011 617 SMART rrm1_1 131 203 IPR000504 GO:0003723
Stsc30214g00011 617 CDD RRM2_I_PABPs 128 204 IPR045305 -
Stsc30214g00011 617 SUPERFAMILY RNA-binding domain, RBD 215 364 IPR035979 GO:0003676
Stsc30214g00011 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 207 IPR000504 GO:0003723
Stsc30214g00011 617 MobiDBLite consensus disorder prediction 1 24 - -
Stsc30214g00011 617 SMART rrm2_1 284 356 IPR003954 GO:0003676
Stsc30214g00011 617 SMART rrm2_1 131 203 IPR003954 GO:0003676
Stsc30214g00011 617 FunFam Polyadenylate-binding protein 131 204 - -
Stsc30214g00011 617 FunFam Polyadenylate-binding protein 28 130 - -
Stsc30214g00011 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Stsc30214g00011 617 CDD RRM4_I_PABPs 282 360 - -
Stsc30214g00011 617 Gene3D - 125 211 IPR012677 -
Stsc30214g00011 617 PANTHER RNA BINDING PROTEIN 41 104 - -
Stsc30214g00011 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 257 IPR000504 GO:0003723
Stsc30214g00011 617 Gene3D - 1 124 IPR012677 -
Stsc30214g00011 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 360 IPR000504 GO:0003723
Stsc30214g00011 617 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 520 597 IPR002004 GO:0003723
Stsc30214g00011 617 FunFam Polyadenylate-binding protein 516 598 - -
Stsc30214g00011 617 Gene3D - 517 599 - -
Stsc30214g00011 617 SUPERFAMILY PABC (PABP) domain 462 609 IPR036053 GO:0003723
Stsc30214g00011 617 Pfam Poly-adenylate binding protein, unique domain 528 592 IPR002004 GO:0003723
Stsc30214g00011 617 FunFam Polyadenylate-binding protein 266 371 - -
Stsc30214g00011 617 MobiDBLite consensus disorder prediction 445 464 - -
Stsc30214g00011 617 SUPERFAMILY RNA-binding domain, RBD 42 211 IPR035979 GO:0003676
Stsc30214g00011 617 SMART poly_2 532 595 IPR002004 GO:0003723
Stsc30214g00011 617 MobiDBLite consensus disorder prediction 1 16 - -
Stsc30214g00011 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Stsc30214g00011 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 250 IPR000504 GO:0003723
Stsc30214g00011 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Stsc30214g00011 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 353 IPR000504 GO:0003723
Stsc30214g00011 617 Gene3D - 264 369 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30214g00011 Stsc-Chr30214 73886 78117 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30214g00011 1 612 Eukaryotic Initiation Factors Gene Family AT4G34110 63.511 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30214g00011 K13126 - mof:131161685 926.776