Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30214g00010 ATGCAACAAGAAGAGGAGCCACAGCAGAATGAGCCACCTCACTCTCACTCTCACTCTCGCTCCGTGACGCTACCTCCCGGTTGCCGGTTCCACCCTTCGGAGGAGCTTCTATTGCGTTACTACCTGAAGAACAAAAACGGCACCGGGAACGGGAACTGGAACGTTAACGGTGGTTTGGGATTCGACGGTTCTGATTTGATTCGGGAGCTGGATTTGTACGGTTACGATCCTTTTGAGTTGCCGGATTTTACTTGCTTTGCGTACGGTTCCGGTGGGAGGAGGAGGCACTGGTACTGTTTCACTACCGTTAGGGTTTCGAAGGGGGAGAGGTGGAAGAGGGAGAGGAAGGTTAAGAGTGGGTTCTGGTTGAAGAAGGGAAGGGTTTTGAACGTTAACGGTGGTGTGGGGAACGTGGTTTTGGGAACGAGGAGGAGGTTCGTTTTCTATTTGGGAAATTCGGTGAAGAACAGTGCTAAAACGGATTGGGTTTTGTATGAATACGCATTGGTTGATCATGTTATGGCCTCTTTTGTTCTTTGCCGGGTATTTAGTAAGCCTCGTTATAAGAATAGTGCCTCAGACATTGGCCTGAGTTGTTGCGCAGAAGAGAGTGGATCAGCAGTGCGCCACATTGGTATTCAGCACGATGAACATGTTAGATCGGATGCTGTTGACCCCAAAGTATGTGATGATGCCTCCATTGACAAAAACAATGAGATATGTCCTGGTGAAAATAGCGATATTCAAGTTAAGAATGCACATGATGTAGATACTTTGCAATGTTTGGCAGGTCCTCAGGGAAGTCAGCAGCTATCAATTGCAAACTTCTACATCAGCAATAATCTGAAAAGTCTAGTCAGAAATGGGGCTATCAGTGTTGGGAGTCAATTAGCGTTTCTATCTTCTTTACAATTACCTTCCCCCCTTTTGTCTTTTTTAGATTTGAGAACTCATTCATGA 960 0.4625 MQQEEEPQQNEPPHSHSHSRSVTLPPGCRFHPSEELLLRYYLKNKNGTGNGNWNVNGGLGFDGSDLIRELDLYGYDPFELPDFTCFAYGSGGRRRHWYCFTTVRVSKGERWKRERKVKSGFWLKKGRVLNVNGGVGNVVLGTRRRFVFYLGNSVKNSAKTDWVLYEYALVDHVMASFVLCRVFSKPRYKNSASDIGLSCCAEESGSAVRHIGIQHDEHVRSDAVDPKVCDDASIDKNNEICPGENSDIQVKNAHDVDTLQCLAGPQGSQQLSIANFYISNNLKSLVRNGAISVGSQLAFLSSLQLPSPLLSFLDLRTHS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30214g00010 319 ProSiteProfiles NAC domain profile. 24 185 IPR003441 GO:0003677|GO:0006355
Stsc30214g00010 319 MobiDBLite consensus disorder prediction 1 26 - -
Stsc30214g00010 319 Pfam No apical meristem (NAM) protein 25 169 IPR003441 GO:0003677|GO:0006355
Stsc30214g00010 319 MobiDBLite consensus disorder prediction 1 22 - -
Stsc30214g00010 319 Gene3D NAC domain 33 189 IPR036093 GO:0003677|GO:0006355
Stsc30214g00010 319 SUPERFAMILY NAC domain 19 185 IPR036093 GO:0003677|GO:0006355
Stsc30214g00010 319 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 24 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30214g00010 Stsc-Chr30214 66921 70692 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30214g00010 23 185 NAC Transcription Factor Family AT1G69490 32.759 6.46e-21 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc30214g00010 NAM 7.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30214g00010 - - aip:107605653 509.22