Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30214g00008 ATGCAAGGACAGCGAGATACAATCGGTTCCTTGCCCGAAACCTTAGAATTCGATTGTGGATCATCATCGAGTGGTGCAACCACTGCCACAGTGAATCAGCAGATTTGCTGGAATAATATGCGGAATCCTGCGGAAAACCGAATACCCGAATACATACTTCCCCCAAGTGATGCAAACCCTTCTTATGTGAATCCTTTGAATCATGGATGGCAGAATTTGAGTGGATGGAGTTTAGGCGAGCCAAGTTACAGTAATACTCAGAATGAGGTTAACATTAACAATGAACAGAAAAGGGAACTAGGATGGTCACCTTCTATAAGTTTTGGTGCTCCTGCCAGTTCAAGACAAGAAGAACGACGTGTTGAACTGACTAATGCTGTCTCAATGGACAATGCCAATACAAGTACTACTATGTACGTGCACGGCGCCAATTCTCATATGATGACTCCGCAGAATCTCAACTTGAATGCAGGAATGGGAGACAGTAGCAGCAGTGCTAATAGCCATCATGTTGAACATGCTAACTTGCCAAAGTCTATTGGACCGGTAAATGAGCATGTTCCTCCCCCGATTATTGGTTCTAGTCCTTTGATGCTTCCTTCGGGAAGTAACAGCCTTTTGTTTGAGGATAACGATGGTAGACCAGGTTGTTCTGTCGACACTCGCCGCGTATCTTGTAAAAGAAAGGCTGTTGAACGCAGTGTTGGACAGTGTTCGGATGGTGGAAGTTCTAGCTACAGTCAGCATACAGATGGTAGTGCTTGGAACACCCTGCCGACTCAGGATTATGGTGGCGGTAGCCTTGCGAGATCTTCTTCGGTAGATAGGGTGAGTTCAAGACTCGGCTTAAGTATGGGGGATGGTCCCTCTGAAAGCATTCGTGATTCGAATGTTGCAGGAAACCCGNNNNNNNNNNTCCGGTTAAGGGTAAATCCTTCGAGTCAACAAAGTTCCATTCCTGTTCCTCCTCCCGCCACATTCTCAACAGGAAATGTGATTAGGACTTCTGGTATTTCTTCATCTGCTCCAACATTGCCAAGATTTCATCCGTCTGATAATTCTCCAGACGTGAGACCGGTACCAACTGTAGATACTATGATTCCTCAAAGTCAGCCCCTTCTAGTTCATGTTCCTGCATTACCAAGGAATATACAATCATTTAGGTGGGGTGGTGCTTCTAGCTCGACAAACAACCATTCGTCAAACTCGGCTATACCTGCTGATAATAGGGACAATAACATACCTCATGATGACCCAAGCTCGAGAAGCTTGCCTAGAAACCTTTTAGAACACCCGGTGTTTGCACCTGGAACTAATTTAAGAAATTTGACTCGAAATCCAACAAGTAGGGCCCCGAGTAATGGAAACTTAAGTATTCCGGGAAATGTTGCTGCTGCTTCTTCATCACGATCTGGGTCACATTCAGCTGTTAATCCATCTTCTGCCTCGCCGTGGGTTGCTCGTCCCAATCCTCAGCATTATCCACGAAGGTTATCTGAATATGTTCGCCGGTCATTGTTTCCTCCTCCTCCCGGCTCCGAGGCTGGTGGCAGTTCAAACAGTAATTATCCTTCCGCACGAGGTCCTGACTCGAGGGCACTGCCATCTGGGGCTCACCCGGGAACACCATCGTGGTTGGATAGGGCAGGTGATCATGAATACGGAATTCCCTATTCGATACGGTCGTTGGCTGTTGCTGGTGAAGGAAGTAGTAGACTTGTGTCTGAGCTCCGAAATGTGTTGGGATTGATGCGCCGTGGTGGGAGCCTGCGATTTGAGGATGTTATGATCCTCGACCAATCGGTGTTTTCTGGAATCGCCGATATTCATGATCGACACAGGGACATGCGACTTGATGTTGATAACATGTCATATGAGGAATTATTGGCTCTGGAAGAGCGCATTGGAAACGTGAGCACCGGACTGAACGAGGAAACCATATTGAAACTTTTGAAACAGAAGAAGCATTCGGCCGAGACTGGATCTCAGCGCGAGTCCGAAGCGGAGCCCTGCTGTGTTTGTCAGGAGGAGTATAAGGACGGCGAAGATATCGGCACGCTGGATTGCGGCCACGATTTCCATACAGAATGTGTTAAACAGTGGCTAAAGCACAAGAATCTGTGTCCAATTTGTAAGACAACAGGGTTGGCAACAAAAACAACATAG 2166 0.4677 MQGQRDTIGSLPETLEFDCGSSSSGATTATVNQQICWNNMRNPAENRIPEYILPPSDANPSYVNPLNHGWQNLSGWSLGEPSYSNTQNEVNINNEQKRELGWSPSISFGAPASSRQEERRVELTNAVSMDNANTSTTMYVHGANSHMMTPQNLNLNAGMGDSSSSANSHHVEHANLPKSIGPVNEHVPPPIIGSSPLMLPSGSNSLLFEDNDGRPGCSVDTRRVSCKRKAVERSVGQCSDGGSSSYSQHTDGSAWNTLPTQDYGGGSLARSSSVDRVSSRLGLSMGDGPSESIRDSNVAGNPXXXXRLRVNPSSQQSSIPVPPPATFSTGNVIRTSGISSSAPTLPRFHPSDNSPDVRPVPTVDTMIPQSQPLLVHVPALPRNIQSFRWGGASSSTNNHSSNSAIPADNRDNNIPHDDPSSRSLPRNLLEHPVFAPGTNLRNLTRNPTSRAPSNGNLSIPGNVAAASSSRSGSHSAVNPSSASPWVARPNPQHYPRRLSEYVRRSLFPPPPGSEAGGSSNSNYPSARGPDSRALPSGAHPGTPSWLDRAGDHEYGIPYSIRSLAVAGEGSSRLVSELRNVLGLMRRGGSLRFEDVMILDQSVFSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETILKLLKQKKHSAETGSQRESEAEPCCVCQEEYKDGEDIGTLDCGHDFHTECVKQWLKHKNLCPICKTTGLATKTT 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30214g00008 721 MobiDBLite consensus disorder prediction 439 487 - -
Stsc30214g00008 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 633 715 IPR013083 -
Stsc30214g00008 721 MobiDBLite consensus disorder prediction 236 364 - -
Stsc30214g00008 721 ProSiteProfiles Zinc finger RING-type profile. 671 712 IPR001841 -
Stsc30214g00008 721 MobiDBLite consensus disorder prediction 150 172 - -
Stsc30214g00008 721 MobiDBLite consensus disorder prediction 150 216 - -
Stsc30214g00008 721 Pfam Ring finger domain 671 712 IPR001841 -
Stsc30214g00008 721 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 222 716 IPR045191 GO:0061630
Stsc30214g00008 721 MobiDBLite consensus disorder prediction 387 548 - -
Stsc30214g00008 721 MobiDBLite consensus disorder prediction 1 24 - -
Stsc30214g00008 721 SMART ring_2 671 711 IPR001841 -
Stsc30214g00008 721 SUPERFAMILY RING/U-box 670 714 - -
Stsc30214g00008 721 FunFam E3 ubiquitin-protein ligase MBR2 637 716 - -
Stsc30214g00008 721 MobiDBLite consensus disorder prediction 308 348 - -
Stsc30214g00008 721 MobiDBLite consensus disorder prediction 237 279 - -
Stsc30214g00008 721 MobiDBLite consensus disorder prediction 387 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30214g00008 Stsc-Chr30214 49382 54171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30214g00008 1 718 C3H Transcription Factor Family AT2G15530 31.656 5.93e-79 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30214g00008 - - lja:Lj0g3v0173889.1 848.58