Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30214g00006 ATGGGTGGCAGCAGCAATGGTGGAACCTTCCCTTGTGACTCATCAGAAGAGTTCTCAGCTTTGTTCAACCAACTACTCTCTCCACCACCACAAATGCCATCCGGGTCGGGTTTTCCACCACAACCCGGCCTAACAAACCGGGTTCTTGGTCCTTCTTCTTCTGCTTCTGTTTCTTCCTCTGCTTTCCATTTCTCTTCTTCTTCTCTTCATTATGATGATGATGATGATGAAGATGATCCTTTTCTTGATCACAATCCTAATAACAACAACAACAACAAAAGCAATAATAATAATTGTAATGACGATTATATCCCTGCACCTCTTCATGACTCTGATGATGCTAACAACAACACAAGGCAATATCATCACCCCATTGAGAAGAATGGTGAGACTTCTGAGTTGCCATCAAGGCATGCCCCACCACCACGTACTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTCCATAATTTATCTGAAAAGAGAAGAAGGAGTAGGATTAATGAGAAGATGAAGGCTTTACAGAATTTAATTCCAAATTCTAACAAGACAGATAAAGCTTCAATGCTTGATGAGGCTATAGAATATTTAAAGCAGCTTCAACTTCAAGTGCAGATGTTAATGATGAGAAATGGTTTGAGCTTACATCCTATGTCATTGCCCGGAGGATTGAGACCTATGATACTGCCGCAAACCGGCGTGGATTTTGATGACGGTAACAGATTTCAGAATTCTATCGGAGGCGGGGCGCCATCATATACATCCGATGAAAGCTTGGTGGCGCGGCCTCCTTTCGGTTTTCACAGACCATGCAGCATCTCAAACCAATCTGTTGCCATGCCATCATTGACAAATGTAGCTACTTCAGATAATAACTCATCAAGCTTTCAATCCTCTATCAAGGATGCACACTGCAGCAACATGCCACAGCTTCTTTTGGATTCAACAAGGATGGGAAAAAACCCATCTCCAGATGTGTCTTAA 981 0.4261 MGGSSNGGTFPCDSSEEFSALFNQLLSPPPQMPSGSGFPPQPGLTNRVLGPSSSASVSSSAFHFSSSSLHYDDDDDEDDPFLDHNPNNNNNNKSNNNNCNDDYIPAPLHDSDDANNNTRQYHHPIEKNGETSELPSRHAPPPRTSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGGLRPMILPQTGVDFDDGNRFQNSIGGGAPSYTSDESLVARPPFGFHRPCSISNQSVAMPSLTNVATSDNNSSSFQSSIKDAHCSNMPQLLLDSTRMGKNPSPDVS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30214g00006 326 MobiDBLite consensus disorder prediction 38 67 - -
Stsc30214g00006 326 MobiDBLite consensus disorder prediction 84 102 - -
Stsc30214g00006 326 Gene3D - 145 209 IPR036638 GO:0046983
Stsc30214g00006 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 210 IPR036638 GO:0046983
Stsc30214g00006 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Stsc30214g00006 326 MobiDBLite consensus disorder prediction 148 162 - -
Stsc30214g00006 326 MobiDBLite consensus disorder prediction 115 133 - -
Stsc30214g00006 326 FunFam Basic helix-loop-helix transcription factor 145 208 - -
Stsc30214g00006 326 Pfam Helix-loop-helix DNA-binding domain 154 200 IPR011598 GO:0046983
Stsc30214g00006 326 CDD bHLH_AtPIF_like 150 212 IPR047265 -
Stsc30214g00006 326 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 13 302 IPR031066 -
Stsc30214g00006 326 MobiDBLite consensus disorder prediction 20 162 - -
Stsc30214g00006 326 SMART finulus 156 205 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30214g00006 Stsc-Chr30214 37577 40259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30214g00006 150 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 83.133 2.74e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30214g00006 HLH 4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30214g00006 - - gmx:100785332 257.684