Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30213g00016 ATGGCATCGTCATCAGACTCATGGATGAAGGAATATAATGAAGCAGTGAAACTTGCCGATGATATCAATGGCATGATTTCTGAACGGAGTTCATTACCCGCATCTGGACCAGAAACTCAGCGTCATGCATCTGCTATAAGAAGGAAGATTACTATTTTAGGGACCAGACTCGATAGCTTGCAATCCCTTTTATCTAAAGTACCCGGAAAATCTGAGAAGGAGATGAATCGCCGCAAGGAAACGCTTAACAATTTGAGGTCAAAGGTTAACCAAATGGCTTCAACACTGAACATGTCAAACTTTGCAAATAGGGATAGTTTATTTGGTCCAGAAATAAAACCAGATGCAATGAGCAGAACTGTTGGCCTGGATAACAGTGGACTTGTTGGACTTCAACGACAAATTATGAGAGAGCAAGATGAAGGCCTTGAAAAATTGGAGGAGACAGTAGTAAGTACAAAGCACATTGCATTAGCAGTGAATGAAGAGCTGGGTCTACACACTAGACTAATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGGCGAGTCCAGAAGAACTTGGCAGTTTTAAACAAGCGTACCAAGGGTGGATGCTCCTGCTTGTGCATGCTTTTTGCAGTGGTTGGTATAGTGGTTTTGGTGGTTGTGATATGGTTGTTGGTCAAATATTTGTAG 690 0.4203 MASSSDSWMKEYNEAVKLADDINGMISERSSLPASGPETQRHASAIRRKITILGTRLDSLQSLLSKVPGKSEKEMNRRKETLNNLRSKVNQMASTLNMSNFANRDSLFGPEIKPDAMSRTVGLDNSGLVGLQRQIMREQDEGLEKLEETVVSTKHIALAVNEELGLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLFAVVGIVVLVVVIWLLVKYL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30213g00016 229 Gene3D - 135 197 - -
Stsc30213g00016 229 PANTHER SYNTAXIN 38 214 IPR045242 -
Stsc30213g00016 229 SMART tSNARE_6 128 195 IPR000727 -
Stsc30213g00016 229 FunFam syntaxin-51 isoform X2 135 197 - -
Stsc30213g00016 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 133 195 IPR000727 -
Stsc30213g00016 229 CDD SNARE_Qc 136 193 - -
Stsc30213g00016 229 SUPERFAMILY SNARE fusion complex 124 194 - -
Stsc30213g00016 229 Pfam SNARE domain 170 221 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30213g00016 Stsc-Chr30213 115839 119304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30213g00016 1 229 SNARE and Associated Proteins AT1G16240 73.276 1.97e-124 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30213g00016 K08503 - gmx:100794038 385.956