Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30212g00084 ATGGCACAGCAGAATTATTCAGGAAACTCAATACTAGGATGCAACAGCAACGACACAAATGGTCCTTCTCCAGATTTCTTATACACCTGCAATGGATTTCAAAAAACCTGCTTAGCCTTCCTCATATTCAAATCCCAAACTCCACACAACACCATTGCCAGAATCTCAAACCTCACTTCCTCAAACCCAAAGGACCTTTCAAGGCTCAACAACGCCACTAGTTCCACGGTGTTCCCAACCGGCAAGGAAGTCATTGTACCTGTCAACTGTTCTTGTCCAAGCAAAGATCATGGTGGTGGTGGTGGTTATGATGAGTACTATCAAGCCCAAACCACATACGTTCTTCCACAAAATCCAACATATTTCGTTACAGCAAATGATACCTATCAGGGGTTAACCACTTGTGATACTCTCATGCGTTATAATCCCTATGGTGTTCTTGATTTGCATCCTGGCATGGTGCTGCACGTGCCCCTCAGATGCGCTTGTCCGACGGCGCGTCAAGCCGGCGCCGGCACCAGGTATCTGCTTACCTACTCAGTTTTTTGGGGTGATAACATCACAAACATAGCCACAAGGTTCCATGTCACAGCAAGTAGTATAGTTGATGCAAATGGTTTCTCCTCAGAAGATGAAGTTCTGTATCCATTCACAACTGTCCTGATTCCATTAACAAGTGAACCCAACAGCTCAATAACCAAAGTTCGAAACGGTCAACCATCTTCTCCACCTACTCTTTACACTGCAACAAAGGATAATAAGACCAAGTCAAACAGAAAAAGAATCATAATTGCTGTTACTTCCTCTGCAAGCTTCTTGGTTTTTCTGTTTGTCATTTTGTCTCTGGTGTTTGTGTCTAGAAAGAGGTTAGCAAAATTCTTTAGGGGAGAAAGAAAAGAGAGACCAAAGCAAGTGTTTTCGAAAACAATACGCGAAGGGCTAGCAAGCATTGAGCTTCTCTCGAAAGTCTACAAGTTCGATGAAATTAAGGAAGCAACTGAGAATTTCAGTGCAAGCAACAGAATCAAAGGCTGTGTCTACCGTGGGGTATTTGGCAAGGAGAGTAGGGAAATAGAAATCATGGCCATCAAGAAGATGAATTCGGATGCATCTAAGGAGGTGAATTTGTTAGGAAGGATCAATCACTTCAACCTGATAAAGCTGGAAGGTTACTGTGAGAAAGATGGATTCTTCTACCTTGTTTTTGAATACATGGAAAATGGTTGTTTGAGAGAATGGCTTGGGAGAAGAAACAAAACAATAGAACACCAGAGTTGGACAAAGAGGATTCGGATTGCTGTGGATATTGCTAATGGACTTGAGTATCTTCATAACTTCACAGATCCTTGCTATGTTCACAAGGCTATAAACACTGATAACATATTGCTGAACAAAGATCTAAGGGCCAAGATAGCTAACTTCACTCTTGCTAAAGAATCAGATAGAGAAGTAACAAGCTCTTGTTCTTATTACACTTCACATGTTGTGGGAACTAGAGGCTACATGGCTCCGGAGTATCTTGATTCGGGGAGAGTCACGTCGAAAATGGATGTGTATGCGTTCGGAGTGGTGCTGTTGGAATTGATCACTGGTAAAGATTCTATTATTGTGCAGGATGATGGAAGTGAGATGATGCTTTCATCAATCATATTGAATCTTGTTGAAAGAGATGATGCAGAAGAGAAACTTGGTTTGTTCATTGATCCTAGTCTGGTGGGAAGCAATGAGAAAGTGTATGCAATTCAGCTAGTTAAGCTAAGCCTAGCATGCTTGGTTGAAGAACCTTCAAGAAGGCCAAACATGGCCGAAGTGGTGTCGAGTTTGCTTAGAATATATGCAGAAATGGAGCCAAGAGTATCACCCTGCAAAAGCTATGACAATGGAAGCATGGAGAGGGACTTGGGACCGCCGCTCCCTCACGGAGCAGCGCCGCCATCGTCCCTCTATCACCGGGTTCGTCCTTCCGTTCACCGCCACCGCCCTTCTTCACTCCACCACCGTCCCATACATCTTCAACCTCGACGCCTACATCGCCGGTCAACCTATCATCTGAGCGAAACACAAAGCCTCCGTCGCCTGAGAGCAAGGGAGGGACTGCATGGATCCTTTGTGGCTGGAAAGCCAATCTTTGTGAAGGAATCCATCTTTGAAAGAACCTCCCGGAAGAATGAGGCTGAAGGTGGGGTAGACACCAGATTTGGTCTAAAGAAGAAGTGGATTCCGACGATTCAACCAAAGCTGCACCATGAACTTAATTATGGTAATGAGGACCGCATAGAACAACTTGAGAAACAAGAGGACAGGAAGTTGTGA 2313 0.441 MAQQNYSGNSILGCNSNDTNGPSPDFLYTCNGFQKTCLAFLIFKSQTPHNTIARISNLTSSNPKDLSRLNNATSSTVFPTGKEVIVPVNCSCPSKDHGGGGGYDEYYQAQTTYVLPQNPTYFVTANDTYQGLTTCDTLMRYNPYGVLDLHPGMVLHVPLRCACPTARQAGAGTRYLLTYSVFWGDNITNIATRFHVTASSIVDANGFSSEDEVLYPFTTVLIPLTSEPNSSITKVRNGQPSSPPTLYTATKDNKTKSNRKRIIIAVTSSASFLVFLFVILSLVFVSRKRLAKFFRGERKERPKQVFSKTIREGLASIELLSKVYKFDEIKEATENFSASNRIKGCVYRGVFGKESREIEIMAIKKMNSDASKEVNLLGRINHFNLIKLEGYCEKDGFFYLVFEYMENGCLREWLGRRNKTIEHQSWTKRIRIAVDIANGLEYLHNFTDPCYVHKAINTDNILLNKDLRAKIANFTLAKESDREVTSSCSYYTSHVVGTRGYMAPEYLDSGRVTSKMDVYAFGVVLLELITGKDSIIVQDDGSEMMLSSIILNLVERDDAEEKLGLFIDPSLVGSNEKVYAIQLVKLSLACLVEEPSRRPNMAEVVSSLLRIYAEMEPRVSPCKSYDNGSMERDLGPPLPHGAAPPSSLYHRVRPSVHRHRPSSLHHRPIHLQPRRLHRRSTYHLSETQSLRRLRAREGLHGSFVAGKPIFVKESIFERTSRKNEAEGGVDTRFGLKKKWIPTIQPKLHHELNYGNEDRIEQLEKQEDRKL 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30212g00084 770 Gene3D Phosphorylase Kinase; domain 1 315 404 - -
Stsc30212g00084 770 Pfam LysM domain 184 223 IPR018392 -
Stsc30212g00084 770 Pfam Protein kinase domain 358 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30212g00084 770 Gene3D Transferase(Phosphotransferase) domain 1 405 626 - -
Stsc30212g00084 770 SUPERFAMILY Protein kinase-like (PK-like) 326 619 IPR011009 -
Stsc30212g00084 770 SUPERFAMILY LysM domain 177 223 IPR036779 -
Stsc30212g00084 770 Gene3D LysM domain 177 234 IPR036779 -
Stsc30212g00084 770 MobiDBLite consensus disorder prediction 229 251 - -
Stsc30212g00084 770 ProSiteProfiles LysM domain profile. 177 222 IPR018392 -
Stsc30212g00084 770 ProSiteProfiles Protein kinase domain profile. 336 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30212g00084 770 FunFam PTI1-like tyrosine-protein kinase 3 405 620 - -
Stsc30212g00084 770 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 2 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30212g00084 Stsc-Chr30212 410709 413437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30212g00084 2 616 Receptor kinase-like Gene Family AT2G23770 37.460 3.59e-119 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc30212g00084 Pkinase 4.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30212g00084 - - gmx:100806221 744.962