Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30212g00079 ATGACGACGGAGCCACCACCACCACCACCAATGCCACTTCCCGGCGAAGAACCCGCCACGTCACCCGCTTTTGACTTAGAAACCGCACCTCAGCCACCCGCCCCGCCCCTCAAAAAGAAGCGAAACCTCCCTGGAATGCCAGATCCGAAAGCTGAGGTGGTTGCTTTGTCGCCGAAGACACTGTTAGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAGGGGTTCCAGAGAGATCAGAACCTCCAGCTCCACCGGCGGGGACACAACCTCCCGTGGAAGCTCCGGCAGCGTGCCACCAAGGAGGTACGGAAGAGGGTGTACGTGTGCCCCGAACCTTCTTGTGTCCACCATAACCCTTCCAGGGCGCTCGGCGACCTCACCGGCATTAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGCTCAAATGCGAACGTTGCTCAAAGAAATACGCCGTTCAATCCGATTGGAAGGCACACATGAAGACCTGCGGAACCAGAGAGTACAGATGCGGTTGCGGCACCTTGTTCTCTAGGAGGGATAGCTTTGTTACGCATAGAGCTTTTTGCGATGCGTTAGCTGAGGAGAGTGCTAAGGCTCAAACCCTAAGCAATGATGATGAGAAGGAAGGTGCTGGTGTGGCGGTGGCTTCTTCTTCATCGCCTCCGCAGCCGCCGCTTACTCCGTCGACTTCGGTGGTGTCTCCGACTCTGTCGATTCAGAGCTCAGAAATTCTGGAAAATGCGACGAGGGTGTCACCGCCAGCTTCGAACACAGCAACGTGTGTTGCGAACGCTGTTACAACAAGCACTGTTTTTGCAACTGTGTTGGCATCCTCAGCACCACCATCAACCACCTCATTCCCCAACCTCACTGCAGCCACATCACTCTCCCTCTCCGTACCACCCTATCTCTCCAACAGCGTTAATAACGACCCACGTCATCACTACACTGCACGTCCACAGCCACCAACAACAGCTGCACTGTCTGCCACAGCATTGCTCCAAAAGGCAGCACAAATGGGTGCAGCTTCGTCCAACACGTCGCTGCTTCGAGGTTTAGGCTTAGCCACGTCATCTCCTACGGGGCATCATCATCATCAAGATAAGAGAGGAATTGAAAACCCAACAATGCAATGGAACATTAGCAGCCATGTGAAGCAAGAGAATCCGAGTTTGGCAGATCATAACCTTGGGCTTGGACTTCCATGTGGGAATACCGGTTTTGCTGATGTGATGATGGGGTCCCCTCCCATGACCCGTGATCTTCTTGGTCTTGGGATCGGTGGCCATGGCAATGGTGGTGATAATGTTAGCAGGGGTGGTCTTTCTGCTTTGTTAAACTCTTTTGGAGGGAACAACTTTGATTCATCTGGTGGAGATGCAGGTGGAGTTCGCCACCAGTAG 1410 0.5376 MTTEPPPPPPMPLPGEEPATSPAFDLETAPQPPAPPLKKKRNLPGMPDPKAEVVALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRATKEVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKLKCERCSKKYAVQSDWKAHMKTCGTREYRCGCGTLFSRRDSFVTHRAFCDALAEESAKAQTLSNDDEKEGAGVAVASSSSPPQPPLTPSTSVVSPTLSIQSSEILENATRVSPPASNTATCVANAVTTSTVFATVLASSAPPSTTSFPNLTAATSLSLSVPPYLSNSVNNDPRHHYTARPQPPTTAALSATALLQKAAQMGAASSNTSLLRGLGLATSSPTGHHHHQDKRGIENPTMQWNISSHVKQENPSLADHNLGLGLPCGNTGFADVMMGSPPMTRDLLGLGIGGHGNGGDNVSRGGLSALLNSFGGNNFDSSGGDAGGVRHQ 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30212g00079 469 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Stsc30212g00079 469 MobiDBLite consensus disorder prediction 355 374 - -
Stsc30212g00079 469 Gene3D Classic Zinc Finger 120 202 - -
Stsc30212g00079 469 MobiDBLite consensus disorder prediction 1 17 - -
Stsc30212g00079 469 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Stsc30212g00079 469 FunFam protein indeterminate-domain 12-like 46 114 - -
Stsc30212g00079 469 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 434 IPR031140 -
Stsc30212g00079 469 Gene3D Classic Zinc Finger 46 113 - -
Stsc30212g00079 469 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Stsc30212g00079 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Stsc30212g00079 469 MobiDBLite consensus disorder prediction 202 235 - -
Stsc30212g00079 469 MobiDBLite consensus disorder prediction 1 50 - -
Stsc30212g00079 469 SMART c2h2final6 143 163 IPR013087 -
Stsc30212g00079 469 SMART c2h2final6 108 138 IPR013087 -
Stsc30212g00079 469 SMART c2h2final6 67 89 IPR013087 -
Stsc30212g00079 469 MobiDBLite consensus disorder prediction 28 42 - -
Stsc30212g00079 469 Pfam Zinc-finger of C2H2 type 67 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30212g00079 Stsc-Chr30212 384995 388711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30212g00079 38 464 IDZ Gene Family AT5G66730 50.405 1.98e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30212g00079 zf-met 0.0033 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30212g00079 K25869 - qsa:O6P43_018833 487.648