Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30212g00066 ATGCATGCAATGATAATTGCCATGGAGCTTCACCGAGGAATGTTTGTAACACTTATAACGCTCTTCTTTTTCCTCCACTTTGGTTTCAGCTCAACCACCACCACCATCACTGAAACTGAAAGATACGCGTTACTTCAACTTCGCAAATCGTTGGGAATTAGCCACAAAGACTGGCCCAGAAAAGCCGAACCATGCCGGAACTGGACCGGAGTTAAGTGCCAATCTGGTCGAGTCGTTGCCCTTAACATCACCGGTTTAAGGCGAACCAGAGTCAATAATCTTCTGCTTCAGTCTCACTCTCACTCTCTCACGAACCTCATCTTCTTATCTTCCTTCACTGCTTCCGGTTTCGTGCTCAATGGTTCCATTCCCAACTGGTTCGGACAGCGCCTTACCAAGCTCCAAGTTCTTGATCTCAGCTCTTGTTCCCTCACCGGCTTGATTCCTTCTTCGCTCGGTGGTTTAACTGAGTTAAAGTTTCTGTCACTTTCGGGCAATGAACTCACGGGTAGATTGCCTTCGCAGCTAGGAAGGCTGTCGGGGTTGACCGTTCTTGATCTTTCTGACAATTCCCTGACCGGAACAGTTCCCAACACAGTGTCCTCTCTGAAGAGCCTTGAAAGGCTTGACCTTTCTGGTAATTTTCTATCTGGGTGTGTTCCACCTGGCTTGGCTGCACTTTCTAATCTCCAAAGTTTGAATCTTTCAGACAATGGCCTCACTGGTTCACTTCATCTTCATCTGGGTAACCTTTCTAGCTTGGTCACTCTTGATCTCAGCAAGAATTCTCTGTCTGGGTCATTGCCCAGTGTTTTGTTTTCCATCCTTTTTAAACTTGAAGTTCTCATTCTAAGCGAGAATGCTTTTGATGGGACTATTCCTGCTACATTGTGGTCAGGGACCAACTTGCAATTTCTTGATTTATCCGGAAATAACCTCACTGGTCCCTTGCCAAAACTAGCTAACTCAAACAATGTTAATTACAGTGGTGCCACCTTTAACGTGTCCAATAATTTGTTGTATGGATCTCTTAATAACATTTTGATTAGCAAGTTTAAAGTAATTGACTTGTCCAATAACTACTTCCAAGGTGAGGTGCAAATTGGTGTTTTTCATAATGATGTAATTTCTCTTGCTAGAAATTGCCTAAGGATGATTCAAAATCAGAGGAATTTTGGGGAATGTAGGGTGTTCTATGGCAAGAGGAGATTAGCCTTTAGTCTTGGTAGTGCTCAAGGACCTGCACAATCACCATTGCAAGATTCAAAGTCAAGAAACAACAAAGAAGTAATATTCATTCTGGCAGGTATATTTGTTGGACTTGGCTTTATAGTGGTTCTTATATTGGTCCTCATAGTTCTGCTAGAAATTGGTGATAATCATAGCAGCAGCATCACAATGCAAAGACAAAAAGGGACGGCGAATTTGTGGCCTGATCATGAAGTAGAAAATCCTACTACACCTCCTAAAGATCATGTGTTTGCAGCTAGGTTGGGTGAATCTTTTACTTATGAGCAAATGCTCCAATTCACTGATAACTTTGCTGAAGCAAATTTAATCAAACGTGGTCATTCTGGAGATCTATTCTTTGGATCCTTGCGAGGTGGAGTAACTGTTGTTGTAAAGAAGGTCAATTTGAATGTATTGAAGAAAGAATCATACATGGTAGAGTTAGGACTATTGAGTAAGGTTTCACATGCAAGATTGGTGCCAGTCTTGGGACACTGCTTGGAGAATGAGCATGAGAAATGCATAGTTTACAAATATATGCCAAATGGTGATTTGGCTACTTCTTTGTACAATGTCACATTTTCAGAAGATAAATTTCAGTCTCTGGATTGGATCACGAGACTGAAAATCGCAACAGGAGCTGCTGAAGGTCTATCTTACCTACATGAGTGCAACCCTCCCTTTGTTCACAGAGATGTCCAAGCAAGCAGTATACTTCTTGATGATAAATTTGAAGTGCGGCTTGGAAGTTTGAGCGAGGTTACTTCCCAAGGAGGTCTCCATCAGAGTGTCATCACCAGGATTTTCCGCAAGTCATTATCTTTTGATCAAGGCAATTCTGGTTCATCATTTGCAACTTGTTCTCAGGACGTGTACTGTTTTGGGAAGGTTTTGCTAGAGCTCATTACTGGTAACATCGGTTTCAGTAATTCAGACGATGCTACCACCAAAGAGTGGTTAGAGCACACACTGTCCTACATAAGTATATATGACAAAGATCAAGTGAGTAAGATTGTTGACCCAAATTTAATCGTAGATGATGATTTATTGGAAGAGGTATGGGCAATGGCAATTGTGGCCAGATCATGCCTGAATCCCAAGCCTTCTAAACGCCCTCCTGTGAGATATGTCCTAAAAGCATTGGAAAATCCCGTTAAGGTTGTCAGAGAAGAAAGTTATAGTTCATCAAGATTAAGAACAACTTCATCCAGATCTTGGAGCTTTGCATTCTTTGGTAGCTGGAGACTGAGCTCATCAGAGATTTCAACAGTCACAGGAACAGGGCATACAAACAGAGAGGGTACCGATGGCTTTAAGGACTCGGGAAGAGTAGGTTCTCAAAGTAGTGTTGGATTGGATCTCTCATCTATCCATAAGAGGTCATCCAATGAAATTTTCACCGAACCATTGGCAATGCAAGATATCGAGTGGCAAGATGGGCAGTTGGGCACTAAGGACTAG 2691 0.4225 MHAMIIAMELHRGMFVTLITLFFFLHFGFSSTTTTITETERYALLQLRKSLGISHKDWPRKAEPCRNWTGVKCQSGRVVALNITGLRRTRVNNLLLQSHSHSLTNLIFLSSFTASGFVLNGSIPNWFGQRLTKLQVLDLSSCSLTGLIPSSLGGLTELKFLSLSGNELTGRLPSQLGRLSGLTVLDLSDNSLTGTVPNTVSSLKSLERLDLSGNFLSGCVPPGLAALSNLQSLNLSDNGLTGSLHLHLGNLSSLVTLDLSKNSLSGSLPSVLFSILFKLEVLILSENAFDGTIPATLWSGTNLQFLDLSGNNLTGPLPKLANSNNVNYSGATFNVSNNLLYGSLNNILISKFKVIDLSNNYFQGEVQIGVFHNDVISLARNCLRMIQNQRNFGECRVFYGKRRLAFSLGSAQGPAQSPLQDSKSRNNKEVIFILAGIFVGLGFIVVLILVLIVLLEIGDNHSSSITMQRQKGTANLWPDHEVENPTTPPKDHVFAARLGESFTYEQMLQFTDNFAEANLIKRGHSGDLFFGSLRGGVTVVVKKVNLNVLKKESYMVELGLLSKVSHARLVPVLGHCLENEHEKCIVYKYMPNGDLATSLYNVTFSEDKFQSLDWITRLKIATGAAEGLSYLHECNPPFVHRDVQASSILLDDKFEVRLGSLSEVTSQGGLHQSVITRIFRKSLSFDQGNSGSSFATCSQDVYCFGKVLLELITGNIGFSNSDDATTKEWLEHTLSYISIYDKDQVSKIVDPNLIVDDDLLEEVWAMAIVARSCLNPKPSKRPPVRYVLKALENPVKVVREESYSSSRLRTTSSRSWSFAFFGSWRLSSSEISTVTGTGHTNREGTDGFKDSGRVGSQSSVGLDLSSIHKRSSNEIFTEPLAMQDIEWQDGQLGTKD 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30212g00066 896 Gene3D Transferase(Phosphotransferase) domain 1 590 811 - -
Stsc30212g00066 896 PRINTS Leucine-rich repeat signature 182 195 - -
Stsc30212g00066 896 PRINTS Leucine-rich repeat signature 251 264 - -
Stsc30212g00066 896 ProSiteProfiles Protein kinase domain profile. 514 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30212g00066 896 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 129 220 - -
Stsc30212g00066 896 ProSiteProfiles Leucine-rich repeat profile. 302 324 IPR001611 GO:0005515
Stsc30212g00066 896 Pfam Leucine rich repeat 253 313 IPR001611 GO:0005515
Stsc30212g00066 896 Pfam Leucine rich repeat 125 168 IPR001611 GO:0005515
Stsc30212g00066 896 Pfam Leucine rich repeat 176 214 IPR001611 GO:0005515
Stsc30212g00066 896 Pfam Leucine Rich repeat 228 242 IPR001611 GO:0005515
Stsc30212g00066 896 Gene3D Ribonuclease Inhibitor 36 198 IPR032675 -
Stsc30212g00066 896 Pfam Leucine rich repeat N-terminal domain 39 73 IPR013210 -
Stsc30212g00066 896 FunFam Predicted protein 485 589 - -
Stsc30212g00066 896 SUPERFAMILY Protein kinase-like (PK-like) 493 791 IPR011009 -
Stsc30212g00066 896 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 221 317 - -
Stsc30212g00066 896 MobiDBLite consensus disorder prediction 835 859 - -
Stsc30212g00066 896 ProSiteProfiles cAMP/cGMP binding motif profile. 519 572 IPR000595 -
Stsc30212g00066 896 FunFam Putative LRR receptor-like serine/threonine-protein kinase 590 812 - -
Stsc30212g00066 896 Gene3D Ribonuclease Inhibitor 199 394 IPR032675 -
Stsc30212g00066 896 SUPERFAMILY L domain-like 47 362 - -
Stsc30212g00066 896 Pfam Protein tyrosine and serine/threonine kinase 520 736 IPR001245 GO:0004672|GO:0006468
Stsc30212g00066 896 Gene3D Phosphorylase Kinase; domain 1 482 589 - -
Stsc30212g00066 896 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 22 371 - -
Stsc30212g00066 896 SMART LRR_typ_2 276 300 IPR003591 -
Stsc30212g00066 896 SMART LRR_typ_2 203 226 IPR003591 -
Stsc30212g00066 896 SMART LRR_typ_2 131 154 IPR003591 -
Stsc30212g00066 896 SMART LRR_typ_2 179 202 IPR003591 -
Stsc30212g00066 896 SMART LRR_typ_2 251 275 IPR003591 -
Stsc30212g00066 896 SMART LRR_typ_2 155 178 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30212g00066 Stsc-Chr30212 327554 331262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30212g00066 39 680 Miscellaneous Gene Families AT2G16250 45.846 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Stsc30212g00066 PK_Tyr_Ser-Thr 7.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30212g00066 - - pcin:129301220 936.791