Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30212g00039 ATGTCAAACTCCATTACCAATCAAAACCAATTTGAGGGGCAAGATTTAGATGCTGCTTATGGTTCTTGTTTGAGAAACAACACTGCATTCACTACTGAGTCTGTAGGAGGAGTGTTTCCCATTATGGAACCTCATCATGCACTAGCAGCAGCAGCTTCTGGCTCTGAGATGAGCCACACAAGGCATTTGATGGATCTTCTTGGAGCAGCTGCTAATGACAGCAATCATCATCATCACCATCATCATCATCACCAACAACATCCTCAACAAGCTCTCTCTCTTTCCTTAGGCTCTCACATGATTGTTCCTTCTCAAGATGAATATGGCAGGCATAATAGTAGATCCTCCTTCATCCATGGTTTCATGAACCCCAATAGTTACTTCATCCCTGGTCAAGATTCAAGGACAGTGGAGAATAATCTAACTAGTGATTACTACTTCAACAACAATGCCGCCACGGCCACCACCACCACCACTTTTGCTTCATCTTCTACCTCTTTTGGGAGTGAATCTTTTGCTTCTCTCATTGGGAACTCTAAGTACCTCAAACCAGTACAGTCCCTTCTTGAAGATCTTGTTGATGTTGGTGGAACCGTGGTTGATAGAATGAATGACAAGTATGTGGAGAAGTTGTTCCGTGGTGGCAGGAACAGTTCAAGGACACTCTCTTCACAGTTGAGGAACAACATAAATAATAATGGTGTCTTGTCAGCTGAAAAACAAGAACATCAGATCAAGATTGCAAATTTGATTTCTTTGCTGGAAGAGGTGGAAGGGAGGTATGAGAAATACTACCATCAAATGGAAGAAGTGGTGGCATCGTTTGAGATGATAGCAGGAGAAGGAGCAGCAAAATGTTACACTGCATTGGCACTACAAGCCATGGGAAGGCACTTCTGCAACCTGAGAGATGCAATAATGTCACAGATAAATTCAGAGAAGAAGAAACTGATGCAAGATTTGCCTAAACTCAACACTAGTTTGTCCCGGTTAAGCCTGTTTGACAGAGACACAAGACAAAACAGAATGTCTCTCCAACAACTTGGGATGATCCAAAGTCAACGCAGCAGCAGCCAACAAGTTTGGAGACCCATCAGAGGCTTGCCTGAAACCTCTGTCGCAATTCTACGTTCTTGGCTCTTCGAGCACTTCCTCCACCCTTATCCGAATGATTCTGAGAAGTTAATGTTGGCGTCACAGACAGGTTTAACAAAAAACCAAGTGTCGAATTGGTTCATAAATGCAAGGGTACGGCTATGGAAACCAATGATAGAAGAAATGTACGAACAAGAGTTTGGAGACTCTTCAGAAGACTCCAACCCTCAAACTAATTTCACCACCGAAGATGCCACCACGCACTGCCACCACCAAGATAACTCAAATCACCAATGA 1392 0.4332 MSNSITNQNQFEGQDLDAAYGSCLRNNTAFTTESVGGVFPIMEPHHALAAAASGSEMSHTRHLMDLLGAAANDSNHHHHHHHHHQQHPQQALSLSLGSHMIVPSQDEYGRHNSRSSFIHGFMNPNSYFIPGQDSRTVENNLTSDYYFNNNAATATTTTTFASSSTSFGSESFASLIGNSKYLKPVQSLLEDLVDVGGTVVDRMNDKYVEKLFRGGRNSSRTLSSQLRNNINNNGVLSAEKQEHQIKIANLISLLEEVEGRYEKYYHQMEEVVASFEMIAGEGAAKCYTALALQAMGRHFCNLRDAIMSQINSEKKKLMQDLPKLNTSLSRLSLFDRDTRQNRMSLQQLGMIQSQRSSSQQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYEQEFGDSSEDSNPQTNFTTEDATTHCHHQDNSNHQ 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30212g00039 463 CDD homeodomain 362 423 IPR001356 GO:0003677
Stsc30212g00039 463 ProSiteProfiles 'Homeobox' domain profile. 381 422 IPR001356 GO:0003677
Stsc30212g00039 463 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 76 441 - -
Stsc30212g00039 463 SMART HOX_1 362 426 IPR001356 GO:0003677
Stsc30212g00039 463 MobiDBLite consensus disorder prediction 431 463 - -
Stsc30212g00039 463 Coils Coil 240 260 - -
Stsc30212g00039 463 Gene3D - 356 437 - -
Stsc30212g00039 463 MobiDBLite consensus disorder prediction 434 450 - -
Stsc30212g00039 463 Pfam Associated with HOX 176 307 IPR006563 -
Stsc30212g00039 463 SMART prehox3 170 308 IPR006563 -
Stsc30212g00039 463 Pfam Homeobox KN domain 379 418 IPR008422 GO:0003677|GO:0006355
Stsc30212g00039 463 SUPERFAMILY Homeodomain-like 368 431 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30212g00039 Stsc-Chr30212 213696 215672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30212g00039 172 441 Homeobox Transcription Factor Family AT2G16400 49.451 8.47e-79 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc30212g00039 POX 4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30212g00039 - - gmx:100807944 551.206