Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30212g00038 ATGTATCCCAATCAAGCATTCTCTGCAGGATCCTATGCTGAGATGTTGTCTCATAATATGGTTGATCCAGCATGCAATTCTTTTGTACAAGGTGAACAAAATTCACAACAGTTCCAAGGCTTATCTCTTAGTCTAGCTACATCTGTTCCTTCCTTTCAATACCACTATCCTGGAGCTGCTACTACTACTACTGCTGCTGCTGCTGCTGAATGCATGGTGTCTTTATCTTCTGGAGGGTATCATCATGAGAGTGCCAAGAGAGAGGGTTTATACAATTCCAATAACTCATCATCAGATCCATGCCTTATTCAGGGATCATTCTCATCAAATGGTGGTGTCTTGAACTCACACTATCTTAAGGCAGCTCAGGAGTTACTTGATGAAATAGTTGGTGTCCGAAAGGCTTTGTTGAAGGACAAACAAGAAAAGTTCAGTAACATTGATGGATCCAAGGATTCTGATGGAAAATGTAACACTCAATCACTGCAAAATAATAATAGTAATGCAAAACCTCCTAATGAACTATCAGCTGAAGAACGCCAGAGTTTCTTGGAAAAGAAGACAAAGCTTTTGGCCTTGTTGGATGAGGTGGACAAGAAATACAGACAGTACTGTCATCAGATGCAGATTGTGGTGTCATCTTTCGACATGGTTGCTGGAATTGGAGCTGCTGAGCCTTACACGTGGCTTGCATTGCGGACCATATCTCGCCATTTCCGGAGCTTGCGCGACGCAATCAGTGGACAAATTCAAGTGATACAGAGGTGCCTTGGGGAGCAAGAAGGGATACCGCGTCTTCGTTATGTAGATCAGCAGCTTAGACAGCAAAAAGCACTTCAGCAACTTGGTGTAATGAGACAAGCTTGGAGGCCTCAGAGGGGTCTCCCTGAAACCTCTGTCTCAATCCTACGTGCTTGGCTCTTCGAGCATTTTCTTCATCCGTATCCCAAGGATTCAGAGAAAATCATGCTAGCGAGACAGACAGGACTAACCAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTTTGGAAGCCAATGGTTGAAGAAATGTATAAAGAAGAGTTTGGTGATTCAGATAACATAAGCTGCAATATTCCATCTGAAACCAAAGGGGAAGTGGATTCACAAGAGAATTTAGCAAGCATGAATGCAGAACTTGATAACAACAACAACAATAATGGGGTTTATAGTTGTGGAAGCATAATGGGATGTAGTACTAGTCCTGCAGCTGGTACATATGATTATGCAGAGTTGGGTAACTTTACATCTACAATGGTGGGTGGACACGTGTCACTTGCATTGGAATTGAGGAACTGTGAAAGGGATGGCATCCACAACAAAAGGCTTAATCAGAATCAGCATGGTTTGGCTTCTTCTTCTTCTTCTTCCTCCCCAGAGACTACTGATCTTCACCTGCTAGATTATCATTTCACAGATTCAGGAAAGCAACAACACACTAGGTTCAGCAGCAACCCTCATCTTCTGCATGAGTTTGTTGTCTGA 1515 0.4304 MYPNQAFSAGSYAEMLSHNMVDPACNSFVQGEQNSQQFQGLSLSLATSVPSFQYHYPGAATTTTAAAAAECMVSLSSGGYHHESAKREGLYNSNNSSSDPCLIQGSFSSNGGVLNSHYLKAAQELLDEIVGVRKALLKDKQEKFSNIDGSKDSDGKCNTQSLQNNNSNAKPPNELSAEERQSFLEKKTKLLALLDEVDKKYRQYCHQMQIVVSSFDMVAGIGAAEPYTWLALRTISRHFRSLRDAISGQIQVIQRCLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSDNISCNIPSETKGEVDSQENLASMNAELDNNNNNNGVYSCGSIMGCSTSPAAGTYDYAELGNFTSTMVGGHVSLALELRNCERDGIHNKRLNQNQHGLASSSSSSSPETTDLHLLDYHFTDSGKQQHTRFSSNPHLLHEFVV 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30212g00038 504 FunFam BEL1-like homeodomain protein 4 292 354 - -
Stsc30212g00038 504 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 76 381 - -
Stsc30212g00038 504 Pfam Associated with HOX 113 247 IPR006563 -
Stsc30212g00038 504 MobiDBLite consensus disorder prediction 151 175 - -
Stsc30212g00038 504 SMART HOX_1 289 353 IPR001356 GO:0003677
Stsc30212g00038 504 Gene3D - 286 364 - -
Stsc30212g00038 504 CDD homeodomain 289 350 IPR001356 GO:0003677
Stsc30212g00038 504 ProSiteProfiles 'Homeobox' domain profile. 286 349 IPR001356 GO:0003677
Stsc30212g00038 504 Pfam Homeobox KN domain 306 345 IPR008422 GO:0003677|GO:0006355
Stsc30212g00038 504 SMART prehox3 110 248 IPR006563 -
Stsc30212g00038 504 MobiDBLite consensus disorder prediction 147 179 - -
Stsc30212g00038 504 SUPERFAMILY Homeodomain-like 290 357 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30212g00038 Stsc-Chr30212 209161 211673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30212g00038 113 444 Homeobox Transcription Factor Family AT4G34610 53.541 5.16e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc30212g00038 POX 7.1e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30212g00038 - - aip:107610078 674.085