Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30212g00031 ATGCTGAAATCTGAGGAGAGGAAACAGCAGCAGGTGAAGAAGCCAGCACAAGCGAGTTCGAGAAAAGGTTGTATGAGAGGGAAAGGTGGACCTGAGAATGCGAGCTGCACTTATAAGGGTGTGAGGCAGAGGACATGGGGGAAATGGGTGGCTGAGATCCGTGAACCCAACCGTGGTGCTCGTCTCTGGCTTGGTACCTTTGAGACTTCTCATGAAGCTGCTCTTGCTTATGATGCTGCTGCTCGTAAGCTTTATGGTCCTGATGCTAAGCTCAATCTCCCTCATCACCATTCATCATCTTCTTCTTCTTCTCCTAATAATATTATTATTAATACCCCGGCAACAGCAACAGCACCACCACCAGTTATCAGTCCTTCATCCATGGTGGCAACTCTTCATCAGCAAGTGGGACCACCGATATACACCACTGATTCATCCTCCATTGTGACATCGTCGTCGCTTTCCAACAATAATATTAATAATAATGGGTATGGAATAATGGAGAACAATAATAATAATAATAATAATGAGAATGAGAATGAGAATGAGGAAGAAGTTATTCCTAGACCATTCTGGGGACCAATGAATGATTCATTGCCTGTGTTTGATGAATCAATATGGACAGAAGCAGCCATGTCACTTGATTTCCCTGTAATTGCTGCTGCAGAGGCTGCCACTGGGATTTTCCCAAACGCCACCAACATGGCAGATGTTGGTGTTTGGGACACTCCATGGTGCATGTAA 744 0.4489 MLKSEERKQQQVKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGPDAKLNLPHHHSSSSSSSPNNIIINTPATATAPPPVISPSSMVATLHQQVGPPIYTTDSSSIVTSSSLSNNNINNNGYGIMENNNNNNNNENENENEEEVIPRPFWGPMNDSLPVFDESIWTEAAMSLDFPVIAAAEAATGIFPNATNMADVGVWDTPWCM 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30212g00031 247 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Stsc30212g00031 247 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Stsc30212g00031 247 MobiDBLite consensus disorder prediction 92 122 - -
Stsc30212g00031 247 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 184 - -
Stsc30212g00031 247 MobiDBLite consensus disorder prediction 1 36 - -
Stsc30212g00031 247 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Stsc30212g00031 247 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Stsc30212g00031 247 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Stsc30212g00031 247 Coils Coil 164 186 - -
Stsc30212g00031 247 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Stsc30212g00031 247 MobiDBLite consensus disorder prediction 94 114 - -
Stsc30212g00031 247 FunFam Ethylene-responsive transcription factor 2 36 95 - -
Stsc30212g00031 247 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
Stsc30212g00031 247 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30212g00031 Stsc-Chr30212 170123 170866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30212g00031 1 219 AP2-EREBP Transcription Factor Family AT1G75490 47.273 3.80e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc30212g00031 AP2 5.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30212g00031 - - gmx:100797850 227.254