Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30212g00024 ATGGCTGGGTTCTTCTCTCTAGGTGGAAGGGGAGCAACTGGCCCACACAGCAACAACAACAAAGAAGAAGAAGAAGAAAGAGTAGTAGAAAAGCATCATCATCATCATCACAACAATAGCAGCCTGTTCTTGTTCAGGAACAACGAGGAGGTGTACAATAACAAAGGAGGATTCGAGATATGGCCGCAGCCCTACCATCAAAACCAAGGTTTGAGCAACTACTACTCGTTTGGAGTGGGTCCTAGTAGCAGAAGGAACAACAACGATAACTCTAACAACAACTCTAACGACGAGGACGTTTCTTTCTGCGTCTCTGATGAGTCCACGCGATTTGGACTGACGGTTATGAGGTCGTCCTCCGGTGGTGGTGGTGGAACGGCGAGCGGCGGCGTGAACTGCCAGGACTGCGGGAACCAAGCAAAGAAAGACTGTGCTCACCTGAGATGCAGGACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTGAAGAGCACGTGGGTTCCCGCTGCAAAACGCCGTGAACGACAGCAACAACTCGCTGCGTTGCAGCAACAGCAGCTCCGTTCAGACACTTGCTCTAAACGACACAGAGATACTCATCATCAACAAGCTCTTGACTCTCTTCCTTGCCCTCCTCCTGTTCCCACCATCACCACCACAGGGTTGGAGCTGGGTCAATTCCCATCGGAAGTAAGCTCTTCAGCGGTGTTTAGGTGTGTGAAAGTTAGCGCAATAGACAGTCCAGATGAACAGTATGCATATCAAACCGCTGTCAACATCGGAGGCCATCTTTTCAAGGGAATTCTCTACGATCAAGGTCCTCAAGGACCTTACACTACTGCCATTGTTGCCGAGCCTTCTTCCGGACCAGCTGAACCTCATCATCAACATCAACAACAACAACTCAGTCTCATAACAGCTGCAACCACCACCACTGCTGGAAACCCCTTTGAGCCGTCTTCGCTTTACCCGGCTCCCCTCAATGCTTTCATGGCCGGTACGCAATTCTTCCCACCCCCAAGGTCTTAA 1035 0.5072 MAGFFSLGGRGATGPHSNNNKEEEEERVVEKHHHHHHNNSSLFLFRNNEEVYNNKGGFEIWPQPYHQNQGLSNYYSFGVGPSSRRNNNDNSNNNSNDEDVSFCVSDESTRFGLTVMRSSSGGGGGTASGGVNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQLRSDTCSKRHRDTHHQQALDSLPCPPPVPTITTTGLELGQFPSEVSSSAVFRCVKVSAIDSPDEQYAYQTAVNIGGHLFKGILYDQGPQGPYTTAIVAEPSSGPAEPHHQHQQQQLSLITAATTTTAGNPFEPSSLYPAPLNAFMAGTQFFPPPRS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30212g00024 344 MobiDBLite consensus disorder prediction 72 101 - -
Stsc30212g00024 344 MobiDBLite consensus disorder prediction 1 42 - -
Stsc30212g00024 344 Pfam Domain of unknown function (DUF702) 130 277 - -
Stsc30212g00024 344 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 330 IPR007818 GO:0003700|GO:0006355
Stsc30212g00024 344 NCBIfam putative zinc finger domain, LRP1 type 132 174 IPR006510 -
Stsc30212g00024 344 NCBIfam LRP1 C-terminal domain 228 276 IPR006511 -
Stsc30212g00024 344 MobiDBLite consensus disorder prediction 17 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30212g00024 Stsc-Chr30212 127558 129995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30212g00024 1 344 C2H2 Transcription Factor Family AT1G75520 45.646 1.14e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc30212g00024 DUF702 1.6e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30212g00024 - - gmx:100794846 357.836