Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30212g00022 ATGGCTAGGGGGAAGATCCAGATCAAGAGGATAGAGAACACAACAAACAGGCAGGTGACATACTCAAAGAGACGCAACGGACTTTTCAAGAAGGCTAACGAGCTCACCGTTCTCTGCGATGCTAAGGTTTCCATAATCATGTTCTCTAGCACTAGCAAGCTCCATGAGTATATTAGCCCCTCCATCTCAACTAAGGAGTTCTTCGATCAGTATCAGATGACCGTAGGAATTGATCTATGGAACTCCCACTATGAGCATATGCAAGAAAACTTGAGGAAGCTGAAAGATGTGAACAGTAATCTTTGCAAGGAGATTAGGCAGAGGATGGGAGATTGTCTGAACGATCTGGGCATAGAAGAGCTTAAACTGCTAGAGGAAGAAATGGACAAGGCCTCTAAGATTATTCGCGAGCGTAAGTACAAGGTGATAACAAGTCAGATTGAAACACAAAGGAAGAAGTTTAATAACGAGAGAGAAGTGCATAACAGACTGTTGCGTGATTTAGATGCAAGAGCAGAAGATCCACGTTATGGATTGGTGGACAATGGAGAGTATGAATCTGTGATAGGATTCTCAAATTTGGGTCCTCGCATGTTTGCATTGAGCCTGCAACCTAGCCATCCTAATCCACATAGCGGAGCAACAACAGCCTCTGATCTTACCACTTACCCTTTACTTTTCTAG 684 0.4357 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTSKLHEYISPSISTKEFFDQYQMTVGIDLWNSHYEHMQENLRKLKDVNSNLCKEIRQRMGDCLNDLGIEELKLLEEEMDKASKIIRERKYKVITSQIETQRKKFNNEREVHNRLLRDLDARAEDPRYGLVDNGEYESVIGFSNLGPRMFALSLQPSHPNPHSGATTASDLTTYPLLF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30212g00022 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc30212g00022 227 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc30212g00022 227 Coils Coil 84 104 - -
Stsc30212g00022 227 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Stsc30212g00022 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc30212g00022 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc30212g00022 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc30212g00022 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc30212g00022 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc30212g00022 227 Coils Coil 151 171 - -
Stsc30212g00022 227 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Stsc30212g00022 227 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Stsc30212g00022 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Stsc30212g00022 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc30212g00022 227 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30212g00022 Stsc-Chr30212 109491 112174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30212g00022 1 226 MADS-box Gene Family AT3G54340 57.143 7.12e-92 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc30212g00022 K-box 1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30212g00022 K09264 - gmx:547720 401.364