Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30212g00017 | ATGGCACTAACAACGGCTACATTCCTCATCTTCACAGCCGTCGCGTACTTCACCACGATAACCGTAACCTTAACGTGCGCCCAACAAACCCGGACCACCGTAACCCTCACCGAGATCGAGGCCTTAACGGCCTTTAAGATCAACCTCCGTGATCCACTCGGCTCCCTTGACGGCTGGGATCCTTCCACGCCGTCAGCGCCGTGTGACTGGCGTGGTGTCCTCTGTTTCAACCACCGAGTCTTCGACCTGCGCTTACCACGTCTCCAACTCGGTGGCCAACTCACTAACTCGCTCTCCAAACTCACTCAGCTCAGAAGGCTCAGCCTCCACTCCAACAACCTCAACGGCCCTATCCCTCACTCCCTCTCCGACTGCCTCCTCCTCCGCGCTGTCTACCTCCACAACAACTCCCTCTCCGGCCACCTCCCTCCGCCGCTCCTCAACCTCACCAACCTCCAGGTACTCAACCTCGCTCACAATCTCCTCTCCGGCACGCTCGTCGGCCACATAACGGACTCCCTCCGGTACCTCGACTTGTCGTCCAACTCATTCTCCGGCGACATTCCGGCGAACTTCTCCTCCGAATCTCAGCTCCAGCTCATCAACTTATCCTACAACGAGTTCTCCGGCGGGATTCCGGTCACCATTGGAGCTCTAACGAAGCTCGAGTATCTCTGGCTTGACTCCAACAACTTGCATGGAACCTTACCTTCAGCTCTCGCAAACTGCACCAACCTCGTTCACATCAGCGCCGAGAACAATGCCATCGGAGGCTTAATCCCTTCCACATTGGGAACCATGCCGAAGCTTCAGGTTCTGTCTCTCTCAACGAATAACCTTTCAGGTTCGGTCCCCGCTTCGCTGTTCTGCGGTTCTTCTTCTTCTTCCTCCCTTCGAATCGTTAAGCTTGGCTTCAATTTTCTCACGGGAGTTTCCGAGCCGCAAAGTGCAAAGAACTGCGTCATCAACAGCGTCTTGGAGGTTTTGGACATTCAACAGAATCACGTTGTTCATGCTGAGTTTCCTTCTTGGTTAACCAGTGCCACGTCACTCAAAGTTCTAGATCTTTCTGGAAACTCGTTTTCCGGCACTCTGCCTTCAGATATTGGAAGCCTCTTCATGTTGGAGGAACTCAGAGTTGCTAATAATTCTTTACACGGTGAAGTTCCGAGCGGCATTGTGAATTGTAGGTTTTTAACGGTTCTTGATCTTCAGGGGAACCGATTCTCTGGCCCTATTCCTTCATTTCTTGGCCAGCTTGGTAACTTGAGGATGCTATCACTTGCTGGAAACGGATTCACCGGTTTTATTCCCGCCGGTTATGGAGCACTCTCTGCGCTTGAGACTTTGAATCTAAGCAATAACAATCTGACAGGGACTGTGCCCTCTGAGATAATGCATTTAGGGAACGTGAGTGCCTTGAATCTCAGCAACAACAGATTCTCCAGCCAAGTCTTACCTGATATCATTGGGGACTTGAAAGCTTTGGAGATTCTTAATTTGAGTCGATGTGGATTCTATGGAAAGGTTCCTGCTAGTCTTGGAAGCTTGATGAAGCTAACTGTGTTGGATTTGAGCAAGCAGAACCTTTCAGGTGAACTACCAATTGAATTCTTTGGTTTGCCGAGTTTGCGAGTTGTTGCATTTCAAGAGAATAGATTGAGTGGTTTTGTTCCTGAGGGTTTCAGCAGCATTGTTAGTCTTCAGTATCTTAATCTCAGTTACAATGCATTCTCTGGGGAGATTCCACCAACCTATGGATTCCTTGGTTCCTTGAGTGTTCTCTCTTTGTCTCACAACAGTATTTCAGGTTCAATACCTTCTGAGATTGGTGATTGTTCTCAACTTGAAGTATTGGAGCTGCATTCGAATCGTTTGGAGGGTAACATTCCGGGGGATATCTCGCTCCTTTCGCGTCTGAAGGAGCTTAATTTGGGACACAATAGATTGAATGGTGATATACCAAATGAAATATCACAATGTTCTGCTCTGATTTCACTCTTGTTGGATGGTAATCAATTCACAGGTCATATACCAGAATCCCTCTCCAAATTATCAAACTTGGCCTCCTTGAATCTATCTTCGAATCAATTGAATGGGGAAATTCCAGCTAGCCTCTCACAAATTAATGGTTTGGAGTATCTAAATGTGTCCAACAATGAACTTGAGGGTGAGATTCCGCAAATGCTTGGTTCAAGATTCAATGACCCTTCCATGTTTGCAATGAACCAAAACTTATGTGGCAAGCCTCTGCATAGAGAATGCGCATATGTAAGAAGGAGAAAGAGGAGAAGACTAATTATCTTCATAGGCGTGGCTGTGGCTGGACTATTCATTTTGGCGCTGTGTTGTTGCGGCTACATTTACAGCCTTTGGAGATGGAGAAACAAGCTCCGGCAAGGGGTAACCGGAGAGAAGAAAAGAAGCCCCACAAGCACAAGCACGGGAGGAGAAAGAGGCAGAGGAAGCGGCGAAAACGGTGGCCCAAAGCTAGTAATGTTCAACAACAAAATCACCTATGCAGAGACATTGGAAGCAACAAGAAACTTTGATGAGGAGAATGTGTTGAGCAGAGGAAGACACGGTCTTGTCTTCAAAGCCACCTACCAAGACGGCATGGTCCTCTCAATTCGCCGCCTCGCCGATGGATCCATCGAAGAGGCCACCTTTCGCAAAGAAGCAGAGTCATTAGGGAAAGTAAAGCACCGAAATCTAACTGTTCTTCGTGGATACTACGCAGGATCACCAGATGTGAGGCTCCTTGTGTACGATTACATGCCAAATGGGAACTTAGGAACATTGCTCCAAGAAGCTTCACAACAAGACGGGCACGTGCTGAATTGGCCAATGAGGCACCTCATTGCACTAGGCATTGCTAGAGGGCTAAGTTTCTTGCACTCGGTGCCAATTGTTCATGGTGATGTGAAGCCTCAGAACGTTCTCTTTGATGCAGATTTCGAAGCACATTTGTCCGAATTCGGGCTAGAGAGATTAAGCATAGCAGCATCAGCAGCAGTGGAAGCCTCATCATCTTCAACCCCAGTTGGTAGCTTAGGGTATGTGTCACCGGAAGCAGCATTAACGGGGCAAGCAACGAAGGAAGCAGATGTATACAGCTTTGGGATAGTGTTGTTGGAGATTCTGACAGGGAAGAAAGCAGTGATGTTTACACAAGATGAGGACATTGTGAAGTGGGTGAAGAAGCAATTGCAAAGGGGACAGATTTCGGAGTTGTTGGAACCTGGTTTGCTTGAGATTGATCCTGAATCTTCAGAGTGGGAAGAGTTCTTGTTGGGTATTAAGGTGGCTCTCTTGTGCACAGCACCTGACCCTCTTGATCGACCTTCCATGCCTGACATTGTTTTCATGCTCGAAGGTTGTCGTGTTGGACCGGAGATACCTTCCTCCGCCGATCCCACAACAATGCCTTCCCCTGCATGA | 3441 | 0.4827 | MALTTATFLIFTAVAYFTTITVTLTCAQQTRTTVTLTEIEALTAFKINLRDPLGSLDGWDPSTPSAPCDWRGVLCFNHRVFDLRLPRLQLGGQLTNSLSKLTQLRRLSLHSNNLNGPIPHSLSDCLLLRAVYLHNNSLSGHLPPPLLNLTNLQVLNLAHNLLSGTLVGHITDSLRYLDLSSNSFSGDIPANFSSESQLQLINLSYNEFSGGIPVTIGALTKLEYLWLDSNNLHGTLPSALANCTNLVHISAENNAIGGLIPSTLGTMPKLQVLSLSTNNLSGSVPASLFCGSSSSSSLRIVKLGFNFLTGVSEPQSAKNCVINSVLEVLDIQQNHVVHAEFPSWLTSATSLKVLDLSGNSFSGTLPSDIGSLFMLEELRVANNSLHGEVPSGIVNCRFLTVLDLQGNRFSGPIPSFLGQLGNLRMLSLAGNGFTGFIPAGYGALSALETLNLSNNNLTGTVPSEIMHLGNVSALNLSNNRFSSQVLPDIIGDLKALEILNLSRCGFYGKVPASLGSLMKLTVLDLSKQNLSGELPIEFFGLPSLRVVAFQENRLSGFVPEGFSSIVSLQYLNLSYNAFSGEIPPTYGFLGSLSVLSLSHNSISGSIPSEIGDCSQLEVLELHSNRLEGNIPGDISLLSRLKELNLGHNRLNGDIPNEISQCSALISLLLDGNQFTGHIPESLSKLSNLASLNLSSNQLNGEIPASLSQINGLEYLNVSNNELEGEIPQMLGSRFNDPSMFAMNQNLCGKPLHRECAYVRRRKRRRLIIFIGVAVAGLFILALCCCGYIYSLWRWRNKLRQGVTGEKKRSPTSTSTGGERGRGSGENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGRHGLVFKATYQDGMVLSIRRLADGSIEEATFRKEAESLGKVKHRNLTVLRGYYAGSPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLSFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLERLSIAASAAVEASSSSTPVGSLGYVSPEAALTGQATKEADVYSFGIVLLEILTGKKAVMFTQDEDIVKWVKKQLQRGQISELLEPGLLEIDPESSEWEEFLLGIKVALLCTAPDPLDRPSMPDIVFMLEGCRVGPEIPSSADPTTMPSPA | 1146 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30212g00017 | 1146 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 35 | 194 | - | - | |
Stsc30212g00017 | 1146 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 813 | 925 | - | - | |
Stsc30212g00017 | 1146 | Gene3D | Ribonuclease Inhibitor | 35 | 170 | IPR032675 | - | |
Stsc30212g00017 | 1146 | Gene3D | Ribonuclease Inhibitor | 396 | 484 | IPR032675 | - | |
Stsc30212g00017 | 1146 | SMART | serkin_6 | 850 | 1123 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Stsc30212g00017 | 1146 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 221 | 483 | - | - | |
Stsc30212g00017 | 1146 | FunFam | LRR receptor-like serine/threonine-protein kinase RPK2 | 926 | 1132 | - | - | |
Stsc30212g00017 | 1146 | Pfam | Leucine Rich Repeat | 350 | 372 | IPR001611 | GO:0005515 | |
Stsc30212g00017 | 1146 | Pfam | Leucine Rich Repeat | 639 | 661 | IPR001611 | GO:0005515 | |
Stsc30212g00017 | 1146 | ProSiteProfiles | Protein kinase domain profile. | 850 | 1133 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Stsc30212g00017 | 1146 | Gene3D | Ribonuclease Inhibitor | 316 | 395 | IPR032675 | - | |
Stsc30212g00017 | 1146 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 396 | 1124 | - | - | |
Stsc30212g00017 | 1146 | MobiDBLite | consensus disorder prediction | 802 | 828 | - | - | |
Stsc30212g00017 | 1146 | PRINTS | Leucine-rich repeat signature | 685 | 698 | - | - | |
Stsc30212g00017 | 1146 | PRINTS | Leucine-rich repeat signature | 447 | 460 | - | - | |
Stsc30212g00017 | 1146 | Gene3D | Ribonuclease Inhibitor | 485 | 763 | IPR032675 | - | |
Stsc30212g00017 | 1146 | SUPERFAMILY | Protein kinase-like (PK-like) | 829 | 1137 | IPR011009 | - | |
Stsc30212g00017 | 1146 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 484 | 759 | - | - | |
Stsc30212g00017 | 1146 | SMART | LRR_typ_2 | 101 | 125 | IPR003591 | - | |
Stsc30212g00017 | 1146 | SMART | LRR_typ_2 | 685 | 709 | IPR003591 | - | |
Stsc30212g00017 | 1146 | SMART | LRR_typ_2 | 420 | 443 | IPR003591 | - | |
Stsc30212g00017 | 1146 | SMART | LRR_typ_2 | 149 | 173 | IPR003591 | - | |
Stsc30212g00017 | 1146 | SMART | LRR_typ_2 | 219 | 243 | IPR003591 | - | |
Stsc30212g00017 | 1146 | SMART | LRR_typ_2 | 372 | 396 | IPR003591 | - | |
Stsc30212g00017 | 1146 | SMART | LRR_typ_2 | 589 | 613 | IPR003591 | - | |
Stsc30212g00017 | 1146 | SMART | LRR_typ_2 | 468 | 493 | IPR003591 | - | |
Stsc30212g00017 | 1146 | SMART | LRR_typ_2 | 444 | 467 | IPR003591 | - | |
Stsc30212g00017 | 1146 | SMART | LRR_typ_2 | 541 | 564 | IPR003591 | - | |
Stsc30212g00017 | 1146 | SMART | LRR_typ_2 | 637 | 661 | IPR003591 | - | |
Stsc30212g00017 | 1146 | SMART | LRR_typ_2 | 267 | 291 | IPR003591 | - | |
Stsc30212g00017 | 1146 | Pfam | Leucine rich repeat N-terminal domain | 38 | 75 | IPR013210 | - | |
Stsc30212g00017 | 1146 | Pfam | Leucine rich repeat | 664 | 722 | IPR001611 | GO:0005515 | |
Stsc30212g00017 | 1146 | Pfam | Leucine rich repeat | 422 | 481 | IPR001611 | GO:0005515 | |
Stsc30212g00017 | 1146 | Pfam | Leucine rich repeat | 519 | 577 | IPR001611 | GO:0005515 | |
Stsc30212g00017 | 1146 | Pfam | Leucine rich repeat | 173 | 232 | IPR001611 | GO:0005515 | |
Stsc30212g00017 | 1146 | Gene3D | Transferase(Phosphotransferase) domain 1 | 926 | 1132 | - | - | |
Stsc30212g00017 | 1146 | ProSiteProfiles | Leucine-rich repeat profile. | 639 | 661 | IPR001611 | GO:0005515 | |
Stsc30212g00017 | 1146 | SUPERFAMILY | L domain-like | 40 | 335 | - | - | |
Stsc30212g00017 | 1146 | SUPERFAMILY | RNI-like | 474 | 746 | - | - | |
Stsc30212g00017 | 1146 | Gene3D | Phosphorylase Kinase; domain 1 | 827 | 925 | - | - | |
Stsc30212g00017 | 1146 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 970 | 982 | IPR008271 | GO:0004672|GO:0006468 | |
Stsc30212g00017 | 1146 | Gene3D | Ribonuclease Inhibitor | 171 | 315 | IPR032675 | - | |
Stsc30212g00017 | 1146 | MobiDBLite | consensus disorder prediction | 805 | 820 | - | - | |
Stsc30212g00017 | 1146 | Pfam | Protein tyrosine and serine/threonine kinase | 853 | 1071 | IPR001245 | GO:0004672|GO:0006468 | |
Stsc30212g00017 | 1146 | SUPERFAMILY | L domain-like | 295 | 546 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30212g00017 | Stsc-Chr30212 | 80023 | 83463 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30212g00017 | 1 | 1146 | Receptor kinase-like Gene Family | AT1G75640 | 64.174 | 0.0 | 1369 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-VII-3 | Stsc30212g00017 | PK_Tyr_Ser-Thr | 1.7e-31 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30212g00017 | - | - | gmx:100784917 | 1632.46 |