Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30212g00017 ATGGCACTAACAACGGCTACATTCCTCATCTTCACAGCCGTCGCGTACTTCACCACGATAACCGTAACCTTAACGTGCGCCCAACAAACCCGGACCACCGTAACCCTCACCGAGATCGAGGCCTTAACGGCCTTTAAGATCAACCTCCGTGATCCACTCGGCTCCCTTGACGGCTGGGATCCTTCCACGCCGTCAGCGCCGTGTGACTGGCGTGGTGTCCTCTGTTTCAACCACCGAGTCTTCGACCTGCGCTTACCACGTCTCCAACTCGGTGGCCAACTCACTAACTCGCTCTCCAAACTCACTCAGCTCAGAAGGCTCAGCCTCCACTCCAACAACCTCAACGGCCCTATCCCTCACTCCCTCTCCGACTGCCTCCTCCTCCGCGCTGTCTACCTCCACAACAACTCCCTCTCCGGCCACCTCCCTCCGCCGCTCCTCAACCTCACCAACCTCCAGGTACTCAACCTCGCTCACAATCTCCTCTCCGGCACGCTCGTCGGCCACATAACGGACTCCCTCCGGTACCTCGACTTGTCGTCCAACTCATTCTCCGGCGACATTCCGGCGAACTTCTCCTCCGAATCTCAGCTCCAGCTCATCAACTTATCCTACAACGAGTTCTCCGGCGGGATTCCGGTCACCATTGGAGCTCTAACGAAGCTCGAGTATCTCTGGCTTGACTCCAACAACTTGCATGGAACCTTACCTTCAGCTCTCGCAAACTGCACCAACCTCGTTCACATCAGCGCCGAGAACAATGCCATCGGAGGCTTAATCCCTTCCACATTGGGAACCATGCCGAAGCTTCAGGTTCTGTCTCTCTCAACGAATAACCTTTCAGGTTCGGTCCCCGCTTCGCTGTTCTGCGGTTCTTCTTCTTCTTCCTCCCTTCGAATCGTTAAGCTTGGCTTCAATTTTCTCACGGGAGTTTCCGAGCCGCAAAGTGCAAAGAACTGCGTCATCAACAGCGTCTTGGAGGTTTTGGACATTCAACAGAATCACGTTGTTCATGCTGAGTTTCCTTCTTGGTTAACCAGTGCCACGTCACTCAAAGTTCTAGATCTTTCTGGAAACTCGTTTTCCGGCACTCTGCCTTCAGATATTGGAAGCCTCTTCATGTTGGAGGAACTCAGAGTTGCTAATAATTCTTTACACGGTGAAGTTCCGAGCGGCATTGTGAATTGTAGGTTTTTAACGGTTCTTGATCTTCAGGGGAACCGATTCTCTGGCCCTATTCCTTCATTTCTTGGCCAGCTTGGTAACTTGAGGATGCTATCACTTGCTGGAAACGGATTCACCGGTTTTATTCCCGCCGGTTATGGAGCACTCTCTGCGCTTGAGACTTTGAATCTAAGCAATAACAATCTGACAGGGACTGTGCCCTCTGAGATAATGCATTTAGGGAACGTGAGTGCCTTGAATCTCAGCAACAACAGATTCTCCAGCCAAGTCTTACCTGATATCATTGGGGACTTGAAAGCTTTGGAGATTCTTAATTTGAGTCGATGTGGATTCTATGGAAAGGTTCCTGCTAGTCTTGGAAGCTTGATGAAGCTAACTGTGTTGGATTTGAGCAAGCAGAACCTTTCAGGTGAACTACCAATTGAATTCTTTGGTTTGCCGAGTTTGCGAGTTGTTGCATTTCAAGAGAATAGATTGAGTGGTTTTGTTCCTGAGGGTTTCAGCAGCATTGTTAGTCTTCAGTATCTTAATCTCAGTTACAATGCATTCTCTGGGGAGATTCCACCAACCTATGGATTCCTTGGTTCCTTGAGTGTTCTCTCTTTGTCTCACAACAGTATTTCAGGTTCAATACCTTCTGAGATTGGTGATTGTTCTCAACTTGAAGTATTGGAGCTGCATTCGAATCGTTTGGAGGGTAACATTCCGGGGGATATCTCGCTCCTTTCGCGTCTGAAGGAGCTTAATTTGGGACACAATAGATTGAATGGTGATATACCAAATGAAATATCACAATGTTCTGCTCTGATTTCACTCTTGTTGGATGGTAATCAATTCACAGGTCATATACCAGAATCCCTCTCCAAATTATCAAACTTGGCCTCCTTGAATCTATCTTCGAATCAATTGAATGGGGAAATTCCAGCTAGCCTCTCACAAATTAATGGTTTGGAGTATCTAAATGTGTCCAACAATGAACTTGAGGGTGAGATTCCGCAAATGCTTGGTTCAAGATTCAATGACCCTTCCATGTTTGCAATGAACCAAAACTTATGTGGCAAGCCTCTGCATAGAGAATGCGCATATGTAAGAAGGAGAAAGAGGAGAAGACTAATTATCTTCATAGGCGTGGCTGTGGCTGGACTATTCATTTTGGCGCTGTGTTGTTGCGGCTACATTTACAGCCTTTGGAGATGGAGAAACAAGCTCCGGCAAGGGGTAACCGGAGAGAAGAAAAGAAGCCCCACAAGCACAAGCACGGGAGGAGAAAGAGGCAGAGGAAGCGGCGAAAACGGTGGCCCAAAGCTAGTAATGTTCAACAACAAAATCACCTATGCAGAGACATTGGAAGCAACAAGAAACTTTGATGAGGAGAATGTGTTGAGCAGAGGAAGACACGGTCTTGTCTTCAAAGCCACCTACCAAGACGGCATGGTCCTCTCAATTCGCCGCCTCGCCGATGGATCCATCGAAGAGGCCACCTTTCGCAAAGAAGCAGAGTCATTAGGGAAAGTAAAGCACCGAAATCTAACTGTTCTTCGTGGATACTACGCAGGATCACCAGATGTGAGGCTCCTTGTGTACGATTACATGCCAAATGGGAACTTAGGAACATTGCTCCAAGAAGCTTCACAACAAGACGGGCACGTGCTGAATTGGCCAATGAGGCACCTCATTGCACTAGGCATTGCTAGAGGGCTAAGTTTCTTGCACTCGGTGCCAATTGTTCATGGTGATGTGAAGCCTCAGAACGTTCTCTTTGATGCAGATTTCGAAGCACATTTGTCCGAATTCGGGCTAGAGAGATTAAGCATAGCAGCATCAGCAGCAGTGGAAGCCTCATCATCTTCAACCCCAGTTGGTAGCTTAGGGTATGTGTCACCGGAAGCAGCATTAACGGGGCAAGCAACGAAGGAAGCAGATGTATACAGCTTTGGGATAGTGTTGTTGGAGATTCTGACAGGGAAGAAAGCAGTGATGTTTACACAAGATGAGGACATTGTGAAGTGGGTGAAGAAGCAATTGCAAAGGGGACAGATTTCGGAGTTGTTGGAACCTGGTTTGCTTGAGATTGATCCTGAATCTTCAGAGTGGGAAGAGTTCTTGTTGGGTATTAAGGTGGCTCTCTTGTGCACAGCACCTGACCCTCTTGATCGACCTTCCATGCCTGACATTGTTTTCATGCTCGAAGGTTGTCGTGTTGGACCGGAGATACCTTCCTCCGCCGATCCCACAACAATGCCTTCCCCTGCATGA 3441 0.4827 MALTTATFLIFTAVAYFTTITVTLTCAQQTRTTVTLTEIEALTAFKINLRDPLGSLDGWDPSTPSAPCDWRGVLCFNHRVFDLRLPRLQLGGQLTNSLSKLTQLRRLSLHSNNLNGPIPHSLSDCLLLRAVYLHNNSLSGHLPPPLLNLTNLQVLNLAHNLLSGTLVGHITDSLRYLDLSSNSFSGDIPANFSSESQLQLINLSYNEFSGGIPVTIGALTKLEYLWLDSNNLHGTLPSALANCTNLVHISAENNAIGGLIPSTLGTMPKLQVLSLSTNNLSGSVPASLFCGSSSSSSLRIVKLGFNFLTGVSEPQSAKNCVINSVLEVLDIQQNHVVHAEFPSWLTSATSLKVLDLSGNSFSGTLPSDIGSLFMLEELRVANNSLHGEVPSGIVNCRFLTVLDLQGNRFSGPIPSFLGQLGNLRMLSLAGNGFTGFIPAGYGALSALETLNLSNNNLTGTVPSEIMHLGNVSALNLSNNRFSSQVLPDIIGDLKALEILNLSRCGFYGKVPASLGSLMKLTVLDLSKQNLSGELPIEFFGLPSLRVVAFQENRLSGFVPEGFSSIVSLQYLNLSYNAFSGEIPPTYGFLGSLSVLSLSHNSISGSIPSEIGDCSQLEVLELHSNRLEGNIPGDISLLSRLKELNLGHNRLNGDIPNEISQCSALISLLLDGNQFTGHIPESLSKLSNLASLNLSSNQLNGEIPASLSQINGLEYLNVSNNELEGEIPQMLGSRFNDPSMFAMNQNLCGKPLHRECAYVRRRKRRRLIIFIGVAVAGLFILALCCCGYIYSLWRWRNKLRQGVTGEKKRSPTSTSTGGERGRGSGENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGRHGLVFKATYQDGMVLSIRRLADGSIEEATFRKEAESLGKVKHRNLTVLRGYYAGSPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLSFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLERLSIAASAAVEASSSSTPVGSLGYVSPEAALTGQATKEADVYSFGIVLLEILTGKKAVMFTQDEDIVKWVKKQLQRGQISELLEPGLLEIDPESSEWEEFLLGIKVALLCTAPDPLDRPSMPDIVFMLEGCRVGPEIPSSADPTTMPSPA 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30212g00017 1146 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 35 194 - -
Stsc30212g00017 1146 FunFam Putative LRR receptor-like serine/threonine-protein kinase 813 925 - -
Stsc30212g00017 1146 Gene3D Ribonuclease Inhibitor 35 170 IPR032675 -
Stsc30212g00017 1146 Gene3D Ribonuclease Inhibitor 396 484 IPR032675 -
Stsc30212g00017 1146 SMART serkin_6 850 1123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30212g00017 1146 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 221 483 - -
Stsc30212g00017 1146 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 926 1132 - -
Stsc30212g00017 1146 Pfam Leucine Rich Repeat 350 372 IPR001611 GO:0005515
Stsc30212g00017 1146 Pfam Leucine Rich Repeat 639 661 IPR001611 GO:0005515
Stsc30212g00017 1146 ProSiteProfiles Protein kinase domain profile. 850 1133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30212g00017 1146 Gene3D Ribonuclease Inhibitor 316 395 IPR032675 -
Stsc30212g00017 1146 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 396 1124 - -
Stsc30212g00017 1146 MobiDBLite consensus disorder prediction 802 828 - -
Stsc30212g00017 1146 PRINTS Leucine-rich repeat signature 685 698 - -
Stsc30212g00017 1146 PRINTS Leucine-rich repeat signature 447 460 - -
Stsc30212g00017 1146 Gene3D Ribonuclease Inhibitor 485 763 IPR032675 -
Stsc30212g00017 1146 SUPERFAMILY Protein kinase-like (PK-like) 829 1137 IPR011009 -
Stsc30212g00017 1146 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 484 759 - -
Stsc30212g00017 1146 SMART LRR_typ_2 101 125 IPR003591 -
Stsc30212g00017 1146 SMART LRR_typ_2 685 709 IPR003591 -
Stsc30212g00017 1146 SMART LRR_typ_2 420 443 IPR003591 -
Stsc30212g00017 1146 SMART LRR_typ_2 149 173 IPR003591 -
Stsc30212g00017 1146 SMART LRR_typ_2 219 243 IPR003591 -
Stsc30212g00017 1146 SMART LRR_typ_2 372 396 IPR003591 -
Stsc30212g00017 1146 SMART LRR_typ_2 589 613 IPR003591 -
Stsc30212g00017 1146 SMART LRR_typ_2 468 493 IPR003591 -
Stsc30212g00017 1146 SMART LRR_typ_2 444 467 IPR003591 -
Stsc30212g00017 1146 SMART LRR_typ_2 541 564 IPR003591 -
Stsc30212g00017 1146 SMART LRR_typ_2 637 661 IPR003591 -
Stsc30212g00017 1146 SMART LRR_typ_2 267 291 IPR003591 -
Stsc30212g00017 1146 Pfam Leucine rich repeat N-terminal domain 38 75 IPR013210 -
Stsc30212g00017 1146 Pfam Leucine rich repeat 664 722 IPR001611 GO:0005515
Stsc30212g00017 1146 Pfam Leucine rich repeat 422 481 IPR001611 GO:0005515
Stsc30212g00017 1146 Pfam Leucine rich repeat 519 577 IPR001611 GO:0005515
Stsc30212g00017 1146 Pfam Leucine rich repeat 173 232 IPR001611 GO:0005515
Stsc30212g00017 1146 Gene3D Transferase(Phosphotransferase) domain 1 926 1132 - -
Stsc30212g00017 1146 ProSiteProfiles Leucine-rich repeat profile. 639 661 IPR001611 GO:0005515
Stsc30212g00017 1146 SUPERFAMILY L domain-like 40 335 - -
Stsc30212g00017 1146 SUPERFAMILY RNI-like 474 746 - -
Stsc30212g00017 1146 Gene3D Phosphorylase Kinase; domain 1 827 925 - -
Stsc30212g00017 1146 ProSitePatterns Serine/Threonine protein kinases active-site signature. 970 982 IPR008271 GO:0004672|GO:0006468
Stsc30212g00017 1146 Gene3D Ribonuclease Inhibitor 171 315 IPR032675 -
Stsc30212g00017 1146 MobiDBLite consensus disorder prediction 805 820 - -
Stsc30212g00017 1146 Pfam Protein tyrosine and serine/threonine kinase 853 1071 IPR001245 GO:0004672|GO:0006468
Stsc30212g00017 1146 SUPERFAMILY L domain-like 295 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30212g00017 Stsc-Chr30212 80023 83463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30212g00017 1 1146 Receptor kinase-like Gene Family AT1G75640 64.174 0.0 1369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Stsc30212g00017 PK_Tyr_Ser-Thr 1.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30212g00017 - - gmx:100784917 1632.46