Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30212g00009 ATGGGAAGACCAGCGTCTTGCTTCAAGCTAATTATATGCGGCGGCGATGGCGCGGAGAAGGACGGTTACCAGGTAGCTCAGATCAAGGATTCTAATGATAAACGCAGTTGGAGTTTCCGCAAGAGATCTGTGACTGCAAAGCAACGTGTTCTTAGCAACACTGTCACTGCAGATTCCTCATCTGCTAACAAGGAGACTTCACAATGTAATACTTTTGATTTTGCACCACTTCCTGAACCTAAGAAGCCCAATTTATGCTCCATTGAGAGTTCAGAAACGAATGTCATTGAAGCAGAGATTAAAAAGGACGTGAATCCCCCAGAATCTGCTGTTATCACTGTCCAGGCTGCTATCAGGGGGTTGCTGGCTCAGAGAGATTTGCTGCAGCTTAAGAATTTAGTGAAATTGCAAGCTGCTGTTCGTGGGCACTTGGTCCGGAGCCATGCTGTAGGAACCCTTCGTTGTGTTCAAGCCATTTCTAAAATGCAGCTTCGTGTGCGAGCTCGTCGCGCTCAGCAATCACAGGCAAATCAAAGCCACATGAACAAGTCAAATGTTATGGATGCATCCATTGAGAAGCTGCTTAGCAATGGGTTTGCTCGCCAGCTATTGGAATCAACACCAAAAAATAAACCTATACATGTCAAGTGTGATCCCTCTAAAGCTGATTCTGCTTGGATGTGGTTGGAGAGGTGGATGTCTGTATCTTCAAAGTATACTTCAGATGACAAAAAAACAAGTTCCCTGACAGAGGAGTCAGAAGTTTATCCAGAGACAGCTGACGCAAAGCCCAGTGTGGAGCATTCAATTCTACCTTCCCGGAACGAAGAGAAGTCAATTATTCATGATGCTAATACCTTCAGCTTTCAAGCAACCTGCCCTGCATCACCTCCTAAGAAGGCAGTTGAATTTCGCGCTAAAGTAGCCTCAGCAGAAATCGGTTCTTTTAAAGATGAAAAATCAGCATCAGATGCAAGTGCCCCAACAGAGCTTAAATCCCTTCCTCAGAAGCCTGAAATTGATGGCGAGCCACGCAAAAGATCAATGAAAAGATATGCATCGGACCAACTAGAAGCTGAACGCAATAGAGCTAGACATGGATTAAGAAAGGTCAGCAATCCTGCATTTATTGCTGCACAGTCAAAATTTGAAGAGCTGAGTTCAACCGTAAATTCTGGTAGGACAAACAGTTTGTCTGATCAAGGTGCAGCAGTTGAATCAGAAGCAGACACCTCTTCTGTCAACATGGATACGGCATATAGATCAAAAGAGTTATCTGAGAATTCTGGTAATAAACTATCGATTTCTTTCACTCTCGATTCACCCAATGTAACTGAGGTTGGTCCTATTGAAGATGACCAAGATGCCAAAGATTTAGAAGGGGTTGGAAATCTTGCCAAGAAAACAAACCTCGATGTTGATACCAATATTCCAAGTGCTATTCCATCTTCTAACTTAGCCACCTCTACTTTGGATCAGACAGAGACTGTTGATGAAATCAATGGCATTAAGGTTCACTCATCAGTTGCTGTGGACTCTAATGATCCTATTAGTAAGAGTGAGAAAAATGCATCTGATGTACAGAGAGATCAAAATGAGGATGCTCTGCAAGGTTTCAGATCATCCCGAGAAGCATCACCTAAAACCCACATAACTGTCCCTGAATCACAAGAAACACCTTCTATGAAAGCCAAAGACAGCAAAGCTGACAAGTCTGGATCCAACAGTAAAATTGGGACCCCACCAGTGGCTAACAGATCACCTGTAAATGGAAACCATGATTCGAGCTCTAGAGGTCAGCTGAGTGGGAAGCGACGCAACTCATTTGGCTCAGTTAAAGCTGATCACATTGACCAAGAACCTACAGATAGCACAAATAACAATAGTTCTCTTCCTCGATTCATGCAAGCAACAGAATCAGCTAAGGCCAAAACCAATGCAAATAACTCACCAAGGTCAAGTCCAGATGTGCATGAACGGGATGTTCAAGTTAAGAAGAGACATTCTTTACCAGGTGCCACTGCTAGGCAGGTTTCTCCACGCATCCAACGATCGATGTCTCAAGCACAGCAGAACTCCAAGGGAAATGGTGTACAACCTCAGCCTCCACAAGAGAGGAAATGGCTGAGGTGA 2133 0.4398 MGRPASCFKLIICGGDGAEKDGYQVAQIKDSNDKRSWSFRKRSVTAKQRVLSNTVTADSSSANKETSQCNTFDFAPLPEPKKPNLCSIESSETNVIEAEIKKDVNPPESAVITVQAAIRGLLAQRDLLQLKNLVKLQAAVRGHLVRSHAVGTLRCVQAISKMQLRVRARRAQQSQANQSHMNKSNVMDASIEKLLSNGFARQLLESTPKNKPIHVKCDPSKADSAWMWLERWMSVSSKYTSDDKKTSSLTEESEVYPETADAKPSVEHSILPSRNEEKSIIHDANTFSFQATCPASPPKKAVEFRAKVASAEIGSFKDEKSASDASAPTELKSLPQKPEIDGEPRKRSMKRYASDQLEAERNRARHGLRKVSNPAFIAAQSKFEELSSTVNSGRTNSLSDQGAAVESEADTSSVNMDTAYRSKELSENSGNKLSISFTLDSPNVTEVGPIEDDQDAKDLEGVGNLAKKTNLDVDTNIPSAIPSSNLATSTLDQTETVDEINGIKVHSSVAVDSNDPISKSEKNASDVQRDQNEDALQGFRSSREASPKTHITVPESQETPSMKAKDSKADKSGSNSKIGTPPVANRSPVNGNHDSSSRGQLSGKRRNSFGSVKADHIDQEPTDSTNNNSSLPRFMQATESAKAKTNANNSPRSSPDVHERDVQVKKRHSLPGATARQVSPRIQRSMSQAQQNSKGNGVQPQPPQERKWLR 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30212g00009 710 ProSiteProfiles IQ motif profile. 108 135 IPR000048 GO:0005515
Stsc30212g00009 710 MobiDBLite consensus disorder prediction 573 607 - -
Stsc30212g00009 710 PANTHER IQ-DOMAIN 5-RELATED 1 678 - -
Stsc30212g00009 710 MobiDBLite consensus disorder prediction 530 560 - -
Stsc30212g00009 710 MobiDBLite consensus disorder prediction 506 521 - -
Stsc30212g00009 710 MobiDBLite consensus disorder prediction 621 653 - -
Stsc30212g00009 710 Pfam IQ calmodulin-binding motif 134 148 IPR000048 GO:0005515
Stsc30212g00009 710 Pfam IQ calmodulin-binding motif 109 126 IPR000048 GO:0005515
Stsc30212g00009 710 Pfam Protein of unknown function (DUF4005) 575 691 IPR025064 -
Stsc30212g00009 710 MobiDBLite consensus disorder prediction 316 366 - -
Stsc30212g00009 710 MobiDBLite consensus disorder prediction 384 434 - -
Stsc30212g00009 710 MobiDBLite consensus disorder prediction 676 700 - -
Stsc30212g00009 710 MobiDBLite consensus disorder prediction 336 366 - -
Stsc30212g00009 710 Gene3D - 107 154 - -
Stsc30212g00009 710 MobiDBLite consensus disorder prediction 506 710 - -
Stsc30212g00009 710 ProSiteProfiles IQ motif profile. 129 158 IPR000048 GO:0005515
Stsc30212g00009 710 MobiDBLite consensus disorder prediction 240 267 - -
Stsc30212g00009 710 MobiDBLite consensus disorder prediction 442 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30212g00009 Stsc-Chr30212 38554 41876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30212g00009 89 710 IQD Protein Family AT1G19870 37.407 2.38e-93 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30212g00009 - - adu:107460052 1158.28