Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30212g00008 ATGCGTGGATTACACAAATCGAAAAGAGTTTCATGGGCCTCCGATTTAGATCTTTGTCAGATTAGGTTATTCTTATCAGAGGAATCTCCTTCTCAAGTTGGTTTAAATTCTCAAGATCACCTCCAAGCAAAGGCATCATTGCTGTCACATCCAGGTGGAACAAGTTCAGATGACTTTCTACCCCCTGGATTTGAGGGAACTCAAGCTTCAACCCATTTTGAGGTTGATGTGTCTCAAATACCGGTGTCTAGGTGGACTACTCCATGCAAGATTATACTTAATCTAACGTGGCAAGTGGTGGCTGGGGAAGAAAGCAAGGAGGCAGAAGATCAATGTCAAAGGGAGATGAGAGTACTTGAAGCAATTTATCCTCGCCCATCTTCCATTCCTCCAAACCCATCTGTTTCAGCGGATGTCGAGGCTTCCCAGTGCATTGATAGCCAAGCTACCTTGATACCTATTACACCTATGGAAGATGAAGATGCTGCAACTGATTCTATCCCACAATCTAATCCTTTTGATTTACCTCCTGCCATGCCAAATGGTNNNNNNNNNNTGCAGTTAGCTCATGGCTCATTATCTGATGCATTAACTAGTGTGATGAGGAGTAATGAACATGGGAATTTGATTGATCATGAATTATTCAATAATATTCTCAAAAATCCAGAAGTGATTGAGAAACTGGTTAGAGATTATGGAGCCTCTAACACTTTGCAGAGTGCAAATAATGCAGGGCCATCTTCAGTGACATTTTCACATCCGTCTCGCCCTAGTCATCAAGTAGAAGCCAGTGTACCGCCATCAGTTACATTTTCATCTACTAACTATCCTTCTTCAGTTGCAAATCAAGTAGGATCCGTTTCTACCCAATGGCATCCTAGGCCGCCGATGAATCAAGCCGGAATTCCTTCTGCCTCTGAGGCCTCGTTACCGAGGGATGTAAATTACTATAAGAGCTTAATTCAACAACATGGAGAAGAGAGACAAGAACCATTCCCCTACGCTGCTAACCGTCAAATCCAGAGACCAATGGGGAACCATGAGACGCCACAACACAACTCTAGATCGAGGGAAACTAAATCCAAGATAATGAAACCTTGTATATTCTTTAACAGTTCTAGAGGATGTCGAAATGGTGCTAATTGTGCATACCAACATGATGTAACATTCCAATCACGAGGTAGTGCCGTGCCTGCGGTACAAAGCTCAAAGAGAATGAAAATGGATAGAGATCAGCAGTTAGATGAACCCGGTTATTCATTTTGA 1266 0.4234 MRGLHKSKRVSWASDLDLCQIRLFLSEESPSQVGLNSQDHLQAKASLLSHPGGTSSDDFLPPGFEGTQASTHFEVDVSQIPVSRWTTPCKIILNLTWQVVAGEESKEAEDQCQREMRVLEAIYPRPSSIPPNPSVSADVEASQCIDSQATLIPITPMEDEDAATDSIPQSNPFDLPPAMPNGXXXXQLAHGSLSDALTSVMRSNEHGNLIDHELFNNILKNPEVIEKLVRDYGASNTLQSANNAGPSSVTFSHPSRPSHQVEASVPPSVTFSSTNYPSSVANQVGSVSTQWHPRPPMNQAGIPSASEASLPRDVNYYKSLIQQHGEERQEPFPYAANRQIQRPMGNHETPQHNSRSRETKSKIMKPCIFFNSSRGCRNGANCAYQHDVTFQSRGSAVPAVQSSKRMKMDRDQQLDEPGYSF 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30212g00008 421 ProSiteProfiles Zinc finger C3H1-type profile. 361 389 IPR000571 GO:0046872
Stsc30212g00008 421 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 254 412 - -
Stsc30212g00008 421 MobiDBLite consensus disorder prediction 394 421 - -
Stsc30212g00008 421 MobiDBLite consensus disorder prediction 45 65 - -
Stsc30212g00008 421 MobiDBLite consensus disorder prediction 237 273 - -
Stsc30212g00008 421 MobiDBLite consensus disorder prediction 161 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30212g00008 Stsc-Chr30212 34688 37624 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc30212g00008 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30212g00008 - - adu:107460053 736.102