Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30212g00005 ATGAAGGAACAACCAGGGAGGCATCGCTACGCCGGCGCGCCCTTTGCATCTATGCCTCAGCCTCAAAATCTTAAGATTCCATTAGAATCTACATTACTGGAAAACACTTTCCTAACAAGTCCATGCATGCCACATTATGATAATGGAACTGTTGAAATGAATAAACTTGGAAACAACAATGGATCCTGTTTATGGATTGCTCAACAAGAAGAATCTGTTGCTAAGAGAGCTCTCTTACAACAGATGAACACAACAGTGCCGAAAGTTAACCGAAAAGGTCATCTTGCAGGTTCAGGTTCAGTTAGCATAATACCAGAAAATGATCAACATTTTCTAACTGAACTAGATCAACATTCTTTTAAATTTGATAATCCTTTTTCTCCTCCTGACATGTCTAAATTAGAATCTGAGGTGTTAAGTGATCAGATGCTTGAGGATTCTGCCAATGTGAATGGCCTAATTCCTCAGCAAGACACAGTTGAATGGGTGGTGCATTCTTCTTGCCAACAAGGATTGCAAGAGCATCATGTAGCAAGATCTGAAGCAGTTTTGAGGAACCTGTCAGTTGAGAGCAACAATCCTAGTGAAATTTGGGATAACACCAGTGTTGTTGATGTTAGCAATGCAAGTGCCACCATGGTTGAGCCTTCAGATTCGAGTGCGATTTTGGATGAATTTTGCACACTGGAGGACAAGGATTTTCAGGAACTATCAGATTGTATGATGACCAACTTCGGTATGAGCCAGGATGTCCAGTCTCAGATAACATCAGCAAGTCTAGCTGAGCCCCATGGCTTTTCTGTGCAAGACCTCGCCGTCAACGCAGGCGGTGCATCTTCAAGCAAGGTTGGTTTTGATGAATGCAGCTTTCTGCAAAATAATTCAAGGCCTCAAGTAGCTGCGAAAGCTCCACCCAGGCGTACCTACACTAAGGTACAAAGGGCTGGTTCTGTAGGAAGATCAATTGATGTCACTGCTTTCAAGAACTATGAGGAACTGATACATGCAATTGAATCCATGTTCGGGTTAGAGGGTCTGCTCAATGACACCAAAGGCAGAGATTCAGAATGGAAATTAGTATATGTTGATTATGAGAATGATGTTCTACTTGTTGGGGATGATCCTTGGGGGGAATTCGTGGCCTGCGTCCGCTGCATCAGAATTTTGTCACCTACAGAAGTTCAGAAGATGAAAATGGACTAA 1203 0.4264 MKEQPGRHRYAGAPFASMPQPQNLKIPLESTLLENTFLTSPCMPHYDNGTVEMNKLGNNNGSCLWIAQQEESVAKRALLQQMNTTVPKVNRKGHLAGSGSVSIIPENDQHFLTELDQHSFKFDNPFSPPDMSKLESEVLSDQMLEDSANVNGLIPQQDTVEWVVHSSCQQGLQEHHVARSEAVLRNLSVESNNPSEIWDNTSVVDVSNASATMVEPSDSSAILDEFCTLEDKDFQELSDCMMTNFGMSQDVQSQITSASLAEPHGFSVQDLAVNAGGASSSKVGFDECSFLQNNSRPQVAAKAPPRRTYTKVQRAGSVGRSIDVTAFKNYEELIHAIESMFGLEGLLNDTKGRDSEWKLVYVDYENDVLLVGDDPWGEFVACVRCIRILSPTEVQKMKMD 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30212g00005 400 SUPERFAMILY CAD & PB1 domains 320 388 - -
Stsc30212g00005 400 FunFam Auxin response factor 302 398 - -
Stsc30212g00005 400 Gene3D - 304 398 - -
Stsc30212g00005 400 Pfam AUX/IAA family 299 394 IPR033389 -
Stsc30212g00005 400 ProSiteProfiles PB1 domain profile. 307 393 IPR000270 GO:0005515
Stsc30212g00005 400 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 66 398 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30212g00005 Stsc-Chr30212 28025 29525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30212g00005 124 397 B3 DNA Binding Superfamily AT1G19850 48.763 6.97e-67 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc30212g00005 AUX_IAA 3.9e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30212g00005 K14486 - adu:107460158 619.387