Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30211g00068 ATGTCATCGCCGGGGTTCACCGGCGGCGGACCATCAGATTTCTTCACCGGAGCAGCCCGATCCACCACCATCAACAACAACCCCAGCGCCTCCGCCTCCGCCGTCGTGAACAACCACCGGCACCTCCACCCTTCCCACCCTCTCTACCGCACCCAACAGCAGCTTCCCGCACTGTTTCTAGATCCTTCCTCACAGATCACGCCTCGCCACCAAACACCAACAACACAACCACCACCTCCAACAACCCTCATCGGTAAACGCACCCTCGCCGAGTTTCAAACCCAACAACAACAACATAACCACCACTTCAATAACCACCTACTTAACAACAACAACAACAACAACAACAACTATGTCCTTTCTAACCTCCTACAACGCTCCGTCAAGCCAAGAACGGCGTCGTTTCATACCGGTTCCCCTTTGTCCCCTTTATCGCCCATAGATTTCTCAATCCCTGAATTGCAAACTCACCCCTACCAAACGCAGCGTTTTGGCATGCCCCTCCTTCACCAGCTTCGTCCTAACCCCATTAACTCCAACAACGTCCCGTTACCTATCACAACCTCCGCTCCTCCTCCCATCCTCAATAATAATAATAATAATAATAATTTCCCGTACCGGTGTTCCAATTTGAGTGGTTCCGTTTCCAACCGGGTTCCGGTTCAGGTTCAACCGGTCGAACCGGAGAAGAAGATCAACATGATGGACCACAGGCTTTTGGAACTGGAGAAGCAGCTTCTAGAAGATGAAGAAGAAGAAGGTGAAGCCGATGCGGCTTCTGTGATCACAACAAGCGAGTGGTCAGAGACTATTCAGAATCTCATGGGAAACGGGCCCGCACAGAAGCCCGCTTCTTCGTCCCCAACATCTTCGACAACGTCTTCAACTTCTTCTTCTTCCTCCGTGGCTTCCCCTGCCATAGCTTGCTGGAAGCAGACGCTAATGGAGGCCGCATCTGCCATAGCCGAAGGCAAACAAGATTCCGCGACTGAGATCCTGGCCCGGTTGAGTCAAGTTTCCAACCCCAATGGTAATTCGGATCAGAGGTTGATGGATTGCATGGTTTCGGCACTGAAATCGAGGGTAAACCCGCTGGAGAATCCTCCTCCCGTGGCTGAGTTGTTCAGCAACGAACACGCCGAGTCGACTCAGTTGATGTTTGAAAACTCGCTCTGTTTCATGGTAGGGTTCATGGCCGCCAACTTCGCAATCCTCGAAGCTGCATTTGAGGACAAAACGGAGCTGAAGAGGTTCTGCGTGGTTGATTTCGATATAGGCCAAGGGAAACAGTACATCAGCCTCTTACTCGCCCTCTCCGCGCGTGGTAGAACACCGCCCGCCATTGTGAGGATCGTCGCGGTGGCGGACACCGCGGGCCAAGAAGTGAAGCTAAAGTCTGTGGGTGACATGCTTGCAAGGCAGGCGGAGAGGTTTAGGATCGGATTCGAGTTCAAAATTGTTCTGGTAACTCAGCGATTCCCCGAGTTGACTCGCGAGTCGCTGGGATGTGACGCGGACGAGTTTCTCGCTGTGAACTTCGCTTTCAAATTGAACCGAATCCCGGACGAGAGCGTGTCCACGGAGAATCCACGCGACGAGCTCTTGAGGCGCGTGAAGTCACTCTCGCCGCGCGTGGTTACGATAATTGAGCAGGAGATAAACGCCAACACGGCGCCGTTTCTGGCGCGCGTGGCTGACACGTGTTCTTATTACGGCGCGCTCTTCGACTCGGTCGAAGCCGCGCTGGGCAAGGACAATAATAGTAACTCGGAGCGAGTCAAGGTGGAGGAAGGACTGAGTCGAAGGGTGTGCAACTCGCTGGCGTGTGAAGGCAGGGACCGCGTGGAGCGTTGCGAAGTTTTCGGAAAATGGCGGGCACGCATGGGAATGGCGGGGTTCAAGAACAAGCCACTGAGTCAGAGCGTGGCCGAGTCGATAAAGACACGACTCGCCCAGGGTAACAACAGTAACAACCGAGTCAACTCGGGACTCACCGTTAAAGAAGAGAACGGTGGGATTTGCTTTGGATGGATGGGGAGAAATCTCACCGTCGCTTCTGCTTGGCTCTGA 2070 0.5372 MSSPGFTGGGPSDFFTGAARSTTINNNPSASASAVVNNHRHLHPSHPLYRTQQQLPALFLDPSSQITPRHQTPTTQPPPPTTLIGKRTLAEFQTQQQQHNHHFNNHLLNNNNNNNNNYVLSNLLQRSVKPRTASFHTGSPLSPLSPIDFSIPELQTHPYQTQRFGMPLLHQLRPNPINSNNVPLPITTSAPPPILNNNNNNNNFPYRCSNLSGSVSNRVPVQVQPVEPEKKINMMDHRLLELEKQLLEDEEEEGEADAASVITTSEWSETIQNLMGNGPAQKPASSSPTSSTTSSTSSSSSVASPAIACWKQTLMEAASAIAEGKQDSATEILARLSQVSNPNGNSDQRLMDCMVSALKSRVNPLENPPPVAELFSNEHAESTQLMFENSLCFMVGFMAANFAILEAAFEDKTELKRFCVVDFDIGQGKQYISLLLALSARGRTPPAIVRIVAVADTAGQEVKLKSVGDMLARQAERFRIGFEFKIVLVTQRFPELTRESLGCDADEFLAVNFAFKLNRIPDESVSTENPRDELLRRVKSLSPRVVTIIEQEINANTAPFLARVADTCSYYGALFDSVEAALGKDNNSNSERVKVEEGLSRRVCNSLACEGRDRVERCEVFGKWRARMGMAGFKNKPLSQSVAESIKTRLAQGNNSNNRVNSGLTVKEENGGICFGWMGRNLTVASAWL 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30211g00068 689 Coils Coil 232 257 - -
Stsc30211g00068 689 ProSiteProfiles GRAS family profile. 301 689 IPR005202 -
Stsc30211g00068 689 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 284 677 IPR005202 -
Stsc30211g00068 689 MobiDBLite consensus disorder prediction 63 84 - -
Stsc30211g00068 689 Pfam GRAS domain family 311 688 IPR005202 -
Stsc30211g00068 689 MobiDBLite consensus disorder prediction 273 301 - -
Stsc30211g00068 689 MobiDBLite consensus disorder prediction 16 35 - -
Stsc30211g00068 689 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30211g00068 Stsc-Chr30211 397821 399890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30211g00068 46 688 GRAS Transcription Factor Family AT5G52510 45.510 1.39e-149 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc30211g00068 GRAS 1.4e-97 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30211g00068 - - gmx:100808172 730.709