Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30211g00066 ATGGATCCAAATGGTTCCATTGATGATAAGTGTGAAAGTAGACTATATATCGGTAACCTTGACCTTAGAATTACAGAAGCTGCTTTGCTCAAAATGTTTTCTCCCTTTGGAAAGATTGTTTCCGAGGACTTCTTGTGGCACACTCGTGGCCCGAAACGTGGGGAACCACGGGGTTTTGCCTTTATCCAGTATAGCACAAATGAGGAAGCGAAATTGGCCATGGAGAAAATGCATGGGAGGTTAGCGTGTGGCCGGCCGTTGGTTGTTCGCCTTGCTGGTGAGAAGTACATGTTGGAAACAGCTGACAACTCTACGAAAGCAGGCGGCGAAGGACACAAGTTGCATCTTACCGGCAGTAGCATGGGTCAGACAAGTCGAAGCGCAAAAATAGCCGCAATAAAGAACAAGTTGAAATCCTTAGAGGAGGGTTCTAGGACCAAGAAGCAGAAGCAAAATGATGATATTTCTTGA 471 0.4586 MDPNGSIDDKCESRLYIGNLDLRITEAALLKMFSPFGKIVSEDFLWHTRGPKRGEPRGFAFIQYSTNEEAKLAMEKMHGRLACGRPLVVRLAGEKYMLETADNSTKAGGEGHKLHLTGSSMGQTSRSAKIAAIKNKLKSLEEGSRTKKQKQNDDIS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30211g00066 156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Stsc30211g00066 156 CDD RRM_RBM18 14 92 IPR039157 -
Stsc30211g00066 156 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 9 88 - -
Stsc30211g00066 156 SMART rrm1_1 14 90 IPR000504 GO:0003723
Stsc30211g00066 156 MobiDBLite consensus disorder prediction 102 156 - -
Stsc30211g00066 156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Stsc30211g00066 156 Gene3D - 5 154 IPR012677 -
Stsc30211g00066 156 MobiDBLite consensus disorder prediction 135 156 - -
Stsc30211g00066 156 SUPERFAMILY RNA-binding domain, RBD 8 98 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30211g00066 Stsc-Chr30211 388294 390465 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30211g00066 13 95 Eukaryotic Initiation Factors Gene Family AT1G71770 39.759 3.01e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30211g00066 K24527 - gmx:100804800 260.381