Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30211g00055 ATGGCAACCTTCCAAAAGGCTCATAGTATTCTCTTTCACATACTATTGATATCTTTACTTCAATTTAAGACAACAATCACAGCATCATCACCAACAAGAACAGAAGCAGAAGCACTTCTTAAATGGAAAAACACTCTCTCACTTCCTCTTCCTCCTTCTCTTAACACATGGTCCCATGCAAACCTTAACAGTCTTTGCAATTGGCATGCCATTGTTTGTGACAAAACAAACACAACAACCTCACAGATAAACCTTTCTAGTTTCAATCTCTCTGGCACCCTTAATGCCTTTTCTTTCACTACTTTTTCAAACCTAACTCTTCTCAGCCTCAATGGTAATAGCCTTAAAGGGTCATTGCCATCCTCAATTGGCAGCCTCTCCAAGCTCACTTTCTTGGACTTGGGAAACAACTTATTTGGAGGTACACTTCCTTCTGAACTAGGCCACTTAATGGAGCTTCAGTATCTCAATTTTCACAATAACAGTTTCAATGGCACCATTCCATATCAGCTCACATATCTCCCCAAGGTATGGCACATGGACCTTGGATCAAATTACTTTGCATCTCCTCCTAATTGGTCTCAATATTCAGGCATGCCTTCATTAACATACCTTGACTTGCATGCAAATAAGCTCACTTCAGAATTCCCAAGTTTCATATTAGAGTGCCACAACTTAACTTACCTTGACCTCCTCAATAACCAGTTTAATGGCACAATACCAGAATCTATGTACACAAATTTGGTCAAGCTTGAATATCTTAACCTCACAAACTGTGGTTTGGAAGGACCACTATCATCTAACCTTTTGAAGCTCTCAAATCTTAAAGAGCTTCTTATAGGCCGTAACAACTTTACCGGTCCTATTCCGAAAGAAATAGGATTCATATCTGGACTTCAACGCCTTGAAATGTATAACATTGAAGCCTATGGCGAAATCCCTTCTTCCATAGGCCAACTCAAGGAGCTAAAGTATCTTGATCTCAGTAATAACTTTTTGAAATCTTCAATCCCTCCTGAGCTTGGCCTATGCACTAATCTCACCTTCCTGGCATTAGCATTTAACAACCTTACCGGTCCCTTGCCTTTGTCATTATCCAATTTATCCAAAATTTCAGAGTTAGGACTCTCCTACAATTCCTTTTCCGGTCGAATTTCAGCTTCACTGATCTCTAACTGGACTGAATTGATATCTCTGCAACTCCAAAACAATAAATTTACCGGAGAGATTCCTCCTGAGGTCGGCCTGTTGAAAAAAATTAAATACCTCTACCTTTTCAAAAATCAATTCTTTGGTCAAATCCCTGGGGAGATTGGAAACTTGAAGGAAATGACAGAATTAGATCTTTCAGGAAACCACTTTTCTGGTACAATTCCATCAACCATTTGGAATCTCACAAACATCACCACAATATTCCTTTTCTTCAATGAGCTCTCTGGAACCATTCCAAGGGATATTGGAAACTTAAAGTCATTGCAATATTTTGATGTTGACAATAACAATTTGGATGGAGAGTTGCCAGACACCATAGCTCAACTAACTGCTTTGATGCATTTTTCTGTTTTCACCAATAACTTCTCAGGAAGCATTACCAGAGATTTTGGAAAGTATAGTCCTTATTTAGAAACAGTCCACCTTAGAAGTAACAGCTTCACAGGAGAGCTCCCACCTGACCTGTGCAGTGGTATGATGCTAACCACCCTGTTAGTCAATAACAACAGCTTTTCTGGGCCGTTACCCAAGTCCTTGACAAATTGTTCTAAACTGATTAAAGTAGAACTTAATGATAATCAATTCTCTGGAAACATCACAGAAGTCTTTGGTGTATATCCAAGTCTTGTTTCTATCAATCTTAGTGGAAATAAGCTTGTTGGTGAGCTCTCCCCTTTGTGGGTTGAATGTGAGAATCTAACTGAAATGCAAATGAGTCAAAACAAACTTTCAGGGAAAATTCCATCTGAGCTAAGTAAGTTGAGTCAGTTACAAGTTCTAACTCTGGACTCCAATGAATTCACAGGCAATGTTCCGCTAGAGTTGGGAAATCTAAGCAAGCTCTACGAGTTCAACTTGAGCAGGAACAATTTGTTAGGTGAAATCCCCCAGAGTATCGGCCAATTAGCTCACCTTTCTGAACTTGATTTGTCAGATAATAAATTCAGTGGAAGCATCCCTAAAGAGATTAGCAATTGTCATGACTTACAAAGCATGAATTTAAGCCACAATAATCTTTCAGGGGAGATTCCATCTGAACTTAGCAATCTGTTCTCACTCCAATATTTCTTGGACCTCAGTGGTAACTCTCTTTCAGGGGAAATTCCTCAAGACCTTGGAAAGCTCATAGCATTAGAGATTCTCAATGTCTCACACAACCGTCTGTTTGGTACAATACCAAATTCTTTGTTGGGTATGCTCAGCATTCAATCTGTTGATTTTTCTTACAACAATTTGACTGGTTTAGTTCCAACTTTTAGTATTTCCCAAACAGCAAATGGTGAAGCTTATGTTGGGAACCCTGGTTTGTGTGGCGATGTAAGAGGTTTACAACATTGCTTCAAAGACAAAGCCAAAGGAGTAAACAAGAAGATTATTCTTGGAGCTATTCTACCAGTTTGTGGCTTACTATTAGGGGTGATTTGTGTTGGAATAGTCCTGTTCCGAGAAAAATGCGGACTGCATGATGAAGAGTCCGACAGCACTCAATATAATGATCAATCAATTTGCATGGTGTGGGGAAAAGATGGAGAATTCACATTTTCTGAACTTGTCAAAGCCACCGATGATTTCGATGACAAGTTCTGCATTGGAAAAGGAGGATTTGGAAGTGTTTACAAGGCAGAATTACCTACAGGTCAAGTTGTTGCTGTCAAAAGGTTAAGTAGTATCTCAAACTTTGATGACATTCCAGCAATGACTCGCCAGAGTTTTGAGAACGAGATAAGAACACTAACAGGAGTGAGGCACCGCAACATAATCAAACTTTATGGTTTCTGTTGCAGGAAGAAACACATGTTCTTGGTTTATGAATATGTAGAGAGGGGAAGCTTAGGGAAAATGTTGCCTGGAGAGGAAGGAAAATTAGAGCTGAGCTGGTCTAAAAGGGTGAGAATTCTTCAGGGTATAGCAAATGCAATTTCCTACCTGCATAATGATTGTTCAACACAGGTTGTGCACCGAGATATTACACCGAATAACATACTGCTAGACTCAGACTATGAACCGCATCTTGCAGATTTTGGCACTGCAAAGCTGTTAAGTTCCAACAACACTTCAAGTTGGACCACCCTAGCAGGTTCTTATGGCTATATAGCTCCAGAGTTAGCACAAACTATGAAGGTAACTGAAAAGTGTGATGTGTATAGTTTTGGAGTGGTGGCATTGGAGATAATAATGGGAAAGCATCCTGCAGAATTCTTAACAAACCTTTCATCAAACATGTCATGGGCATTAATGGAGGATCAAGAGGTGCTTGTGAAGGATGTGCTAGACCAACGGCTTCCACCTCCAACAGGCCAAATAGCTGAAGCAGTGGTATTAGCAGTGACCATAGCTATGCCATGCACAAATGCATCGCCAGAATGTAGACCCACCATGCATTCTGTAGCACAAAAGCTATCTGCTATTAAGTTGTCATACTCCATAGCATGA 3645 0.3989 MATFQKAHSILFHILLISLLQFKTTITASSPTRTEAEALLKWKNTLSLPLPPSLNTWSHANLNSLCNWHAIVCDKTNTTTSQINLSSFNLSGTLNAFSFTTFSNLTLLSLNGNSLKGSLPSSIGSLSKLTFLDLGNNLFGGTLPSELGHLMELQYLNFHNNSFNGTIPYQLTYLPKVWHMDLGSNYFASPPNWSQYSGMPSLTYLDLHANKLTSEFPSFILECHNLTYLDLLNNQFNGTIPESMYTNLVKLEYLNLTNCGLEGPLSSNLLKLSNLKELLIGRNNFTGPIPKEIGFISGLQRLEMYNIEAYGEIPSSIGQLKELKYLDLSNNFLKSSIPPELGLCTNLTFLALAFNNLTGPLPLSLSNLSKISELGLSYNSFSGRISASLISNWTELISLQLQNNKFTGEIPPEVGLLKKIKYLYLFKNQFFGQIPGEIGNLKEMTELDLSGNHFSGTIPSTIWNLTNITTIFLFFNELSGTIPRDIGNLKSLQYFDVDNNNLDGELPDTIAQLTALMHFSVFTNNFSGSITRDFGKYSPYLETVHLRSNSFTGELPPDLCSGMMLTTLLVNNNSFSGPLPKSLTNCSKLIKVELNDNQFSGNITEVFGVYPSLVSINLSGNKLVGELSPLWVECENLTEMQMSQNKLSGKIPSELSKLSQLQVLTLDSNEFTGNVPLELGNLSKLYEFNLSRNNLLGEIPQSIGQLAHLSELDLSDNKFSGSIPKEISNCHDLQSMNLSHNNLSGEIPSELSNLFSLQYFLDLSGNSLSGEIPQDLGKLIALEILNVSHNRLFGTIPNSLLGMLSIQSVDFSYNNLTGLVPTFSISQTANGEAYVGNPGLCGDVRGLQHCFKDKAKGVNKKIILGAILPVCGLLLGVICVGIVLFREKCGLHDEESDSTQYNDQSICMVWGKDGEFTFSELVKATDDFDDKFCIGKGGFGSVYKAELPTGQVVAVKRLSSISNFDDIPAMTRQSFENEIRTLTGVRHRNIIKLYGFCCRKKHMFLVYEYVERGSLGKMLPGEEGKLELSWSKRVRILQGIANAISYLHNDCSTQVVHRDITPNNILLDSDYEPHLADFGTAKLLSSNNTSSWTTLAGSYGYIAPELAQTMKVTEKCDVYSFGVVALEIIMGKHPAEFLTNLSSNMSWALMEDQEVLVKDVLDQRLPPPTGQIAEAVVLAVTIAMPCTNASPECRPTMHSVAQKLSAIKLSYSIA 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30211g00055 1214 FunFam Nuclear pore complex protein NUP107 32 192 - -
Stsc30211g00055 1214 Pfam Leucine Rich Repeat 323 340 IPR001611 GO:0005515
Stsc30211g00055 1214 Pfam Leucine Rich Repeat 782 802 IPR001611 GO:0005515
Stsc30211g00055 1214 SUPERFAMILY RNI-like 524 821 - -
Stsc30211g00055 1214 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Stsc30211g00055 1214 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 538 854 - -
Stsc30211g00055 1214 SUPERFAMILY RNI-like 83 389 - -
Stsc30211g00055 1214 ProSiteProfiles Protein kinase domain profile. 928 1207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30211g00055 1214 Gene3D Transferase(Phosphotransferase) domain 1 1010 1212 - -
Stsc30211g00055 1214 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1055 1067 IPR008266 GO:0004672|GO:0006468
Stsc30211g00055 1214 FunFam Leucine-rich repeat receptor protein kinase MSP1 891 1009 - -
Stsc30211g00055 1214 Gene3D Ribonuclease Inhibitor 518 852 IPR032675 -
Stsc30211g00055 1214 FunFam MDIS1-interacting receptor like kinase 2 1010 1210 - -
Stsc30211g00055 1214 SMART LRR_sd22_2 706 732 - -
Stsc30211g00055 1214 SMART LRR_sd22_2 102 128 - -
Stsc30211g00055 1214 SMART LRR_sd22_2 320 341 - -
Stsc30211g00055 1214 SMART LRR_sd22_2 344 370 - -
Stsc30211g00055 1214 SMART LRR_sd22_2 441 467 - -
Stsc30211g00055 1214 FunFam MDIS1-interacting receptor like kinase 2 197 389 - -
Stsc30211g00055 1214 SUPERFAMILY Protein kinase-like (PK-like) 903 1204 IPR011009 -
Stsc30211g00055 1214 CDD STKc_IRAK 934 1204 - -
Stsc30211g00055 1214 ProSitePatterns Protein kinases ATP-binding region signature. 934 956 IPR017441 GO:0005524
Stsc30211g00055 1214 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 513 1206 - -
Stsc30211g00055 1214 Gene3D Phosphorylase Kinase; domain 1 891 1009 - -
Stsc30211g00055 1214 ProSiteProfiles Leucine-rich repeat profile. 322 344 IPR001611 GO:0005515
Stsc30211g00055 1214 Gene3D Ribonuclease Inhibitor 292 387 IPR032675 -
Stsc30211g00055 1214 Pfam Protein kinase domain 933 1202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30211g00055 1214 SUPERFAMILY RNI-like 302 624 - -
Stsc30211g00055 1214 Pfam Leucine rich repeat 684 743 IPR001611 GO:0005515
Stsc30211g00055 1214 Pfam Leucine rich repeat 200 261 IPR001611 GO:0005515
Stsc30211g00055 1214 Gene3D Ribonuclease Inhibitor 193 291 IPR032675 -
Stsc30211g00055 1214 Gene3D Ribonuclease Inhibitor 388 510 IPR032675 -
Stsc30211g00055 1214 SMART LRR_typ_2 199 223 IPR003591 -
Stsc30211g00055 1214 SMART LRR_typ_2 320 344 IPR003591 -
Stsc30211g00055 1214 SMART LRR_typ_2 779 803 IPR003591 -
Stsc30211g00055 1214 SMART LRR_typ_2 441 465 IPR003591 -
Stsc30211g00055 1214 SMART LRR_typ_2 489 513 IPR003591 -
Stsc30211g00055 1214 SMART LRR_typ_2 102 125 IPR003591 -
Stsc30211g00055 1214 SMART LRR_typ_2 658 682 IPR003591 -
Stsc30211g00055 1214 SMART LRR_typ_2 706 730 IPR003591 -
Stsc30211g00055 1214 SMART LRR_typ_2 126 150 IPR003591 -
Stsc30211g00055 1214 Gene3D Ribonuclease Inhibitor 32 192 IPR032675 -
Stsc30211g00055 1214 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 436 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30211g00055 Stsc-Chr30211 315329 319136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30211g00055 28 652 Receptor kinase-like Gene Family AT4G08850 30.769 2.86e-77 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc30211g00055 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30211g00055 - - gmx:100786462 1566.98