Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30211g00053 ATGGTATCCAAAAACCCCAACCCGCCAGAGGGCTTTTACTTGGACCCCTCCGGCGCCGCTCTCCCCGGTCTCGCACCTTTCGCCTCCGTCACTGCCGCCGCCGCCACCGCCACCGCTGTCTCCGCCCCTAACTCCTCCGACGACGCCGCAAAGAAAATCCGAAAGCCCTACACTATCACCAAGTCCAGGGAGAATTGGACTGAACCCGAACACGACAAGTTCCTCGAAGCCCTTCAACTGTTTGATCGTGACTGGAAAAAGATTGGAGCATTTGTTGGATCAAAGACAGTTATACAGATACGTAGTCATGCGCAGAAATATTTCATAAAAGTTCAGAAGAGCGGGACAAGTGAACATCTTCCTCCACCCAGGCCGAAAAGAAAAGCTGCCCATCCTTATCCTCAAAAGGCTTCCAAAAATGAATGTTTTCAAACTTCATCTGCTTTGCTTGAATCTGGATATGTACTGAAACATGATCCCTCCACAATGCTTCAAGCTCCTATTGTGAACACTGTGGTGCCTTCATGGTCAAACTCCACCTTGCAAACCACTAATTTAAAGCATGTACCAAAAGTGAAAAACCCTTCCGGTAGCAGTGAGAGTACTCCCAGAGTGCAGCCAGGTGATGAATCTAATGGACAAGGGAATAGTAGCTTTCCATTAAGAGTTCTTCCAGATTTCACCCAGGTATACAGCTTCATTGGCAGTGTATTTGATCCAAATACAACTGATCATCTACACAAACTGAAAAATATGGATCGTATAGATGTTGAGACGGTCCTGTTGTTGATGAGAAATCTCTCTATCAATTTAACTAGCCCAGATTTTGAGGACCATAGGAAGGTACTTTCAACATACGAGGTTGAACTTGATACAGATGACTACATCAATGCAGATATACTTCAGGATGATCAGTTGAAGAGTGCTACCTAG 933 0.4577 MVSKNPNPPEGFYLDPSGAALPGLAPFASVTAAAATATAVSAPNSSDDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIGAFVGSKTVIQIRSHAQKYFIKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNECFQTSSALLESGYVLKHDPSTMLQAPIVNTVVPSWSNSTLQTTNLKHVPKVKNPSGSSESTPRVQPGDESNGQGNSSFPLRVLPDFTQVYSFIGSVFDPNTTDHLHKLKNMDRIDVETVLLLMRNLSINLTSPDFEDHRKVLSTYEVELDTDDYINADILQDDQLKSAT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30211g00053 310 CDD SANT 65 108 IPR001005 -
Stsc30211g00053 310 MobiDBLite consensus disorder prediction 184 219 - -
Stsc30211g00053 310 PANTHER SWI/SNF COMPLEX-RELATED 36 272 - -
Stsc30211g00053 310 SUPERFAMILY Homeodomain-like 57 113 IPR009057 -
Stsc30211g00053 310 Gene3D - 65 113 - -
Stsc30211g00053 310 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Stsc30211g00053 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 61 110 IPR006447 GO:0003677
Stsc30211g00053 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Stsc30211g00053 310 FunFam protein REVEILLE 6 isoform X1 65 113 - -
Stsc30211g00053 310 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Stsc30211g00053 310 SMART sant 62 110 IPR001005 -
Stsc30211g00053 310 MobiDBLite consensus disorder prediction 113 138 - -
Stsc30211g00053 310 ProSiteProfiles SANT domain profile. 61 112 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30211g00053 Stsc-Chr30211 308038 312436 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30211g00053 Myb_DNA-binding 1.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30211g00053 - - gmx:100783949 432.565