Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30211g00040 ATGAATCATGAGGAGGATTGGGATCTCTTTGCCATAGTTAGAAGCTGCAAAGCTGCAAACAACACAGCACAAACATCACAAGAGACAAGTAGCAGTAGTAATAGCTTCATGTCTTCTTCTACTAATACTTGCTTGGCCACTACAGAACAAAATGATGGTCCATTTTCTTCCAACAATTTTGCTCAACCCTGGACCAATGGTTTCCAAGAGTTAAACCAATTGCTCAATACCTTTAACCCCACCATCACCACCACCACCACTACCACTAGTGCCCATGGCATCAATCCTAACCCTCCTTTTCCTCATTTCACAGCTCCATCCACCATTGGAGCCTCGACTTCTGGTTTTGATGACAGATTCCACCACCATCACCAACAACAACAACAACAAAAACACCATAATCAACTACAAGTTCAAGTTCCCCAAACTAGTACTACTGCTCTGGCCTTATTACCAAGCTCAGAATCACAAATACAAACACCCAGATCAAGAAAAAGAAAAAGCCAACAGAAGAAAATGGTATGCCAAGTAACCGCAGATAACCTCTCATCAGATTTGTGGGCATGGCGTAAATATGGCCAAAAACCCATCAAAGGTTCCCCATATCCAAGAAACTACTACAGATGCAGCAGCTGCAAGGGTTGTGCAGCAAGAAAGCAAGTAGAGCGAAGCTTATCAGACCCCACCATGTTCGTCGTCACTTACACCGGAGAACACAAGCACGCTAAACCGGCACACCGGAACTCACTCGCCGGAAGTACCCGTAAACCATCCACAACTACTCGTTTACCTGAGATCCAAGAAAGCACTGATAATAACAATCCTGATGAGAAGTCTCAGAGCAGCACCACAGAGAAATACCAGAACGCTAAACCAGAAGTACAAACGGAAATTGAACAAGAAATGGATGAGTCCTCCTCTGAAGATGACAGTGATGGTGATGATGGTGGTGTCTTGATTCCCAACACCACTGCTACAATGTCGGATGCAGTGTTCTTAGGAAGCAGCAGCCGCACCGCCGCTGCTGCCACGTGGCACTACGACGGTGGATTTGAGAACAGTTCCGATCCGGACGGTTCAACTAATCAGATCTAA 1095 0.4548 MNHEEDWDLFAIVRSCKAANNTAQTSQETSSSSNSFMSSSTNTCLATTEQNDGPFSSNNFAQPWTNGFQELNQLLNTFNPTITTTTTTTSAHGINPNPPFPHFTAPSTIGASTSGFDDRFHHHHQQQQQQKHHNQLQVQVPQTSTTALALLPSSESQIQTPRSRKRKSQQKKMVCQVTADNLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSLSDPTMFVVTYTGEHKHAKPAHRNSLAGSTRKPSTTTRLPEIQESTDNNNPDEKSQSSTTEKYQNAKPEVQTEIEQEMDESSSEDDSDGDDGGVLIPNTTATMSDAVFLGSSSRTAAAATWHYDGGFENSSDPDGSTNQI 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30211g00040 364 MobiDBLite consensus disorder prediction 238 323 - -
Stsc30211g00040 364 ProSiteProfiles WRKY domain profile. 178 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30211g00040 364 MobiDBLite consensus disorder prediction 251 295 - -
Stsc30211g00040 364 MobiDBLite consensus disorder prediction 299 315 - -
Stsc30211g00040 364 FunFam WRKY transcription factor 22 166 237 - -
Stsc30211g00040 364 MobiDBLite consensus disorder prediction 111 138 - -
Stsc30211g00040 364 SUPERFAMILY WRKY DNA-binding domain 179 244 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30211g00040 364 Gene3D WRKY domain 166 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30211g00040 364 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 310 IPR044810 GO:0003700
Stsc30211g00040 364 MobiDBLite consensus disorder prediction 20 41 - -
Stsc30211g00040 364 MobiDBLite consensus disorder prediction 150 173 - -
Stsc30211g00040 364 Pfam WRKY DNA -binding domain 185 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30211g00040 364 SMART WRKY_cls 183 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30211g00040 Stsc-Chr30211 249827 251498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30211g00040 162 258 WRKY Transcription Factor Family AT5G52830 79.381 3.03e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc30211g00040 WRKY 8.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30211g00040 - - ahf:112751868 479.559