Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30210g00072 ATGGCGGTTTCTGAGTTTGGAATTTTTGGAATCAATCTTGAGCGTCACCGCAACCACAGCACTTCGCCCAATACCTACACCACGGCCACCGTTCGCCGGAAAGCCTCTTATCCAGCGCCGGCGAGAGACTTATCTTCCTACCTGGAGGATCGTCCATTCCGTTTGCGCTGCCACAGGTTTGAACCTTTTAATAGCGTTCTAGGTTTCTACACCATTGTTATTTTTCCCTTCTTCGTGCAAAGATGTGACCTTTGGAGGCATAAGAAGCAGAAAGAGGAGGATATTGCTATATGTGAATGCAAATATAATGTTGACGACCCCGATAGTGCATGTGGGGACAGCTGCCTCAATGTTTTAACCAGCACCGAATGTACTCCTGGTTATTGCCCATGCGGTGACCGCTGCAAAAATCAGAGATTTCAGAAGTGTGAGTATGCAAAAACAAAGTTGTTTAAAACTGAAGGTCGTGGGTGGGGTCTTTTGGCTGATGAGAACATTAAGGCGGGACAATTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCGCAGGCTTACGAAATTCAAGGTCTAACAGATGCATTTATCATTTGCCTTAACGCCTCTGAATCTATTGATGCAACAAGAAAGGGAAGTCTTGGCAGATTTATAAATCATTCCTGTCAACCAAACTGTGAGACAAGAAAATGGAATGTCTTGGGCGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTTTTGGAGCTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTGTGTGGTGCAGCCAGATGTTCTGGATTTCTTGGAGCAAAATCTCGTGGTTTCCAGGAAGATACTTACCTATGGGAAGATGATGATGAAAGGTACTCTGTTGAGAAAATTCCTGTATATGACTCTGCAGAGGATGAATTGGGGACAGAAGTTCTTAAACGCATGAGCTTAGAGAGTTCTGCAAATGATTTTAATGGAAGAATAGGACCCTCCATGGATAACACACTAAAAGCTGAGCAGCTACCAGATTCCGGTGCTTTCAGCATTCCCCTTGACTTGGCTCAGATGAAGGATTTAGACGACAAGAAGATTAAAACTGAAGTAGTAAGCGAGGATATGAAATTGGACTCTGAAGATACTGAACAGGCATTCTCCCAAAAGAATGCAATGATCTCGCGTATCCGAAGCAACACTGCTTCCAGAAACTATCACCTTGGACCCCGGTCCATGTCTACTAAACGCACCAAGGCACATAGAGGCAGAAAGTTGAAAAATCTTGTACGGAAGGAAGTTGATGCCAAGTTTGCAGCTGGGCTCTTGGCTTCAAAGGAGGCACAAGAGGAGATTCTAAAATATGAGGAAGTAAAGAATAATGCTGCTTCTGATCTGGATTCCTTATACGATGAAATAAGGCCAGCCATTGAAGAACACGAGAGAGATAGCCAAGACAGTGTGTCTACCTCTGTAGCAGAGAAGTGGATTCAAGCTTGCTGCGTAAAATTGAAGGCAGAGTTTAATCTTTACTCCTCAATTATAAAAAATGTCGCTTGCAATGCTCAAAGGGCTAAACCACCCCCAGAAGCTGATAATGGAAACGAAATTAAGCTGTTGACGGGTTGA 1662 0.432 MAVSEFGIFGINLERHRNHSTSPNTYTTATVRRKASYPAPARDLSSYLEDRPFRLRCHRFEPFNSVLGFYTIVIFPFFVQRCDLWRHKKQKEEDIAICECKYNVDDPDSACGDSCLNVLTSTECTPGYCPCGDRCKNQRFQKCEYAKTKLFKTEGRGWGLLADENIKAGQFVIEYCGEVISWKEAKRRSQAYEIQGLTDAFIICLNASESIDATRKGSLGRFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPFGAELAYDYNFEWFGGAKVRCLCGAARCSGFLGAKSRGFQEDTYLWEDDDERYSVEKIPVYDSAEDELGTEVLKRMSLESSANDFNGRIGPSMDNTLKAEQLPDSGAFSIPLDLAQMKDLDDKKIKTEVVSEDMKLDSEDTEQAFSQKNAMISRIRSNTASRNYHLGPRSMSTKRTKAHRGRKLKNLVRKEVDAKFAAGLLASKEAQEEILKYEEVKNNAASDLDSLYDEIRPAIEEHERDSQDSVSTSVAEKWIQACCVKLKAEFNLYSSIIKNVACNAQRAKPPPEADNGNEIKLLTG 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30210g00072 553 PANTHER SET DOMAIN PROTEINS 87 528 - -
Stsc30210g00072 553 SMART PostSET_3 270 286 IPR003616 -
Stsc30210g00072 553 FunFam Histone-lysine N-methyltransferase 71 298 - -
Stsc30210g00072 553 SMART set_7 146 269 IPR001214 GO:0005515
Stsc30210g00072 553 MobiDBLite consensus disorder prediction 415 434 - -
Stsc30210g00072 553 ProSiteProfiles Post-SET domain profile. 270 286 IPR003616 -
Stsc30210g00072 553 Pfam SET domain 157 263 IPR001214 GO:0005515
Stsc30210g00072 553 SMART shorttest3 93 145 IPR006560 GO:0005634|GO:0042054
Stsc30210g00072 553 Gene3D SET domain 78 299 IPR046341 -
Stsc30210g00072 553 ProSiteProfiles AWS domain profile. 93 144 IPR006560 GO:0005634|GO:0042054
Stsc30210g00072 553 ProSiteProfiles SET domain profile. 146 263 IPR001214 GO:0005515
Stsc30210g00072 553 Coils Coil 456 476 - -
Stsc30210g00072 553 Pfam AWS domain 105 143 IPR006560 GO:0005634|GO:0042054
Stsc30210g00072 553 SUPERFAMILY SET domain 92 283 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30210g00072 Stsc-Chr30210 482307 489010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30210g00072 128 285 C2H2 Transcription Factor Family AT2G23740 34.807 1.09e-20 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc30210g00072 SET 3.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30210g00072 - - gmx:100775294 748.429