Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30210g00070 ATGGGGTGTGTTCAGGCCAAGACACTTGAAGGTCCTGGTCATGAACCTAAGGGACTAGACAGGCTCAAATTGGAAAATGGGTATGTATCAAATTCTGATTTTGCTGCTCACAGGAGATCCACTGGTCAAAGGTATGAGCCTATGGAGGATGCTAATGGTAGGCATCATCATCAGAAGAGAGAATCTCAACCAAGAAACCGTTCAAGAGTTGATGAGCCTGCTGCTGGTGTTCCTGGTGGCCACAATGGTGAAAGTGGGAAGGGGAAAGGGGGTGTTACTAGAGAGAGGAAGAAGAGAGATTTGGCAAAGAAGAAGACATTTGAGGATGATTATGAGATGGTTGATGGATGGCCCAAATGGCTAGTTGATAATGTTCCTGCTCAAGTCTTTGCTGGATTGGTCCCAAGGAGTGCTGAATCCTACAAAATGATTGATAAGGTAGGACAAGGAACATACAGCAATGTTTATAAAGCTCTAGATCGCGAGACCAGGGAAATTGTTGCCCTCAAAAAGGTCCGCTTCAATACATCAGAGCCCGAAAGCATTAAGTTTATGGCAAGAGAAATCATGATACTACAAAGATTGGATCATCCTAATGTGCTAAAACTTAAAGGATTAGCAACTTCAAGAATGCAGTACAGTATATATCTAGTTTTTGAATTCATGCAAACCGATTTGACAAGAATTATTTCTCATTCTGAAGAGAGGCTAACCGAGCCACAGGTCAAGTGCTATATGCAGCAATTGCTTTCTGGTCTGCAGCATTGCCATGAGAGGGGAATTTTACATCGAGATATAAAGGGATCAAACCTTTTGATTGATAAACATGGAATGCTTAAGATTGCAGACTTTGGGCTTGCCAACTATTATAGTCCAAACCGAGAGCATCCTCTCACAAGCCGGGTCGTGACACTGTGGTATAGAGCCCCAGAGTTGCTGTTAGGTGCCACGGATTATGGAGTCGGTATCGATCTATGGAGTGCTGGATGCCTCCTTGCAGAAATGCTCACAGGAATTCCACTCATGCCTGGCAGAACAGAGTTTTTCTTTACAAGCCCCTTGGCCTGTGATCTCTCTGGTTTGCCTGTAATCCACAGAGAGGATGATGAAATTGATCAAGCCAAAGAACAGATCAAGTACATGAACTCTAAAATCAGGCGTTCTCGTACATACCTGGAGCGTCGCAAGAGTTTAGCTCCCAAGAGGCAGATAGAACATACCGTGTCTAACAAGGAGGATTCAAGAAGGAATGTAGAACCTGAAACTTACATTCCAAGCGAAGAACCGGGTAGCGCAACCACAAGCAGTACCTCATCTAGTGTAAACCCAGCTATGGCTAAGGAGCAGTCATCTTTATCTCCCTTTCCTCTTTTGGCTTCAGATAAAAAAGTGGTCCCAAAAGTCCATCACCATGGCAATGTTGGTGAAAATACAAGGTACCTTCCTCCATTACCCAAGTCAAAACCAAAAGCAACCAAGAATGATGACTATGGCAGATTCAGTTTCAGGAGTGCTTCTACCAGAGAATTTAGAAACTTTAAGCGGGACGACTATTTACTCTTCGAAATCGATTAG 1575 0.4362 MGCVQAKTLEGPGHEPKGLDRLKLENGYVSNSDFAAHRRSTGQRYEPMEDANGRHHHQKRESQPRNRSRVDEPAAGVPGGHNGESGKGKGGVTRERKKRDLAKKKTFEDDYEMVDGWPKWLVDNVPAQVFAGLVPRSAESYKMIDKVGQGTYSNVYKALDRETREIVALKKVRFNTSEPESIKFMAREIMILQRLDHPNVLKLKGLATSRMQYSIYLVFEFMQTDLTRIISHSEERLTEPQVKCYMQQLLSGLQHCHERGILHRDIKGSNLLIDKHGMLKIADFGLANYYSPNREHPLTSRVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMLTGIPLMPGRTEFFFTSPLACDLSGLPVIHREDDEIDQAKEQIKYMNSKIRRSRTYLERRKSLAPKRQIEHTVSNKEDSRRNVEPETYIPSEEPGSATTSSTSSSVNPAMAKEQSSLSPFPLLASDKKVVPKVHHHGNVGENTRYLPPLPKSKPKATKNDDYGRFSFRSASTREFRNFKRDDYLLFEID 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30210g00070 524 MobiDBLite consensus disorder prediction 470 498 - -
Stsc30210g00070 524 SMART serkin_6 141 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30210g00070 524 MobiDBLite consensus disorder prediction 396 422 - -
Stsc30210g00070 524 MobiDBLite consensus disorder prediction 1 101 - -
Stsc30210g00070 524 ProSitePatterns Protein kinases ATP-binding region signature. 147 170 IPR017441 GO:0005524
Stsc30210g00070 524 Gene3D Transferase(Phosphotransferase) domain 1 224 428 - -
Stsc30210g00070 524 SUPERFAMILY Protein kinase-like (PK-like) 136 348 IPR011009 -
Stsc30210g00070 524 FunFam Mitogen-activated protein kinase 222 394 - -
Stsc30210g00070 524 PANTHER CELL DIVISION PROTEIN KINASE 139 376 - -
Stsc30210g00070 524 MobiDBLite consensus disorder prediction 39 57 - -
Stsc30210g00070 524 Coils Coil 364 384 - -
Stsc30210g00070 524 FunFam probable serine/threonine-protein kinase At1g54610 128 223 - -
Stsc30210g00070 524 ProSiteProfiles Protein kinase domain profile. 141 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30210g00070 524 Pfam Protein kinase domain 141 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30210g00070 524 MobiDBLite consensus disorder prediction 396 448 - -
Stsc30210g00070 524 MobiDBLite consensus disorder prediction 427 448 - -
Stsc30210g00070 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Stsc30210g00070 524 Gene3D Phosphorylase Kinase; domain 1 131 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30210g00070 Stsc-Chr30210 469019 472186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30210g00070 136 347 Core Cell Cycle Gene Families AT5G10270 50.220 2.13e-68 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc30210g00070 Pkinase 9.2e-63 CL0016