Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30210g00054 ATGCCGGGATCGGAGAATGGGACGCCAACTGCGGCGTCTATGCCGGCGACACCGGATACTCCGGGCGGGCCACTGTTCACATCGCTGCGAGTGGACTCACTGACACACGAAGCGTCGTTTACAGTGGAAAGGTGCGGCAAGTGTTTGCCAAGTGCCATGAGCAAGAGCCATGGTTGCATCACTGATTTCACTGTTGGTGTTCCAATGCCAAATGTCTCCCTTGCTCAAAAGGTTGGAGCAGAGTTTGTTGGAACATTCATACTCATATATGCAGCAACAGCAGGGCCCATTGTCAACACCAAGTACAACGGAGCAGAGTCTCTAATCGGCAACGCAGCATGCGCCGGCCTCACTGTCATGTTCATCATCCTCTCCATCGGCCACATCTCCGGCGCACATCTCAATCCATCCCTCACCATTGCCTTCGCCGCATTCCGCCACTTCCCCTGGACTCAGGTCCCTGCCTACATTGCCGCTCAAGTCTCTGCTTCCATCTGTGCCTGCTTTGCTCTCAAGGGCGTTTACCACCCTTTCCTCACCGGCGGCGTCACCGTCCCTTCTGACATCACCGTTGGCCAGGCCTTTGCCACCGAGTTCATCATCACTTTCATTCTCATGTTTGTTGTAACTGCTGTCGCCACTGATACTCGTGCCGTTGGAGAGTTGGCCGGTATTGCTGTTGGTGCCACTGTTTTGCTCAACATCCTCATTTCAGGGCCAACAAGTGGCGGTTCGATGAACCCGGTTCGAACGCTGGGTCCAGCGGTAGCGGCAGGGAATTACAAGCATATATGGCTGTACTTGGTGGCGCCGACATTGGGTGCTCTTTCAGGCGCCGGTGTTTATACGCTGGTGAAGCTGCAGGAGAGCGAGGCTCAGCNNNNNNNNNNAGGGTAG 897 0.5474 MPGSENGTPTAASMPATPDTPGGPLFTSLRVDSLTHEASFTVERCGKCLPSAMSKSHGCITDFTVGVPMPNVSLAQKVGAEFVGTFILIYAATAGPIVNTKYNGAESLIGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWTQVPAYIAAQVSASICACFALKGVYHPFLTGGVTVPSDITVGQAFATEFIITFILMFVVTAVATDTRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWLYLVAPTLGALSGAGVYTLVKLQESEAQXXXXG 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30210g00054 298 ProSitePatterns MIP family signature. 133 141 IPR022357 -
Stsc30210g00054 298 MobiDBLite consensus disorder prediction 1 26 - -
Stsc30210g00054 298 MobiDBLite consensus disorder prediction 1 15 - -
Stsc30210g00054 298 PANTHER AQUAPORIN NIP2-1 57 291 IPR034294 -
Stsc30210g00054 298 FunFam Aquaporin NIP2-1 64 296 - -
Stsc30210g00054 298 PRINTS Major intrinsic protein family signature 115 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30210g00054 298 PRINTS Major intrinsic protein family signature 76 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30210g00054 298 PRINTS Major intrinsic protein family signature 197 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30210g00054 298 PRINTS Major intrinsic protein family signature 265 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30210g00054 298 PRINTS Major intrinsic protein family signature 152 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30210g00054 298 PRINTS Major intrinsic protein family signature 228 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30210g00054 298 Pfam Major intrinsic protein 72 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30210g00054 298 SUPERFAMILY Aquaporin-like 73 291 IPR023271 -
Stsc30210g00054 298 Gene3D Glycerol uptake facilitator protein. 69 296 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30210g00054 Stsc-Chr30210 379618 385569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30210g00054 25 290 Major Intrinsic Protein MIP AT4G10380 73.606 9.39e-138 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30210g00054 K09874 - gmx:100775229 495.738