Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30210g00048 ATGCTGCAACTTCTCAACCTCTCTTCCACCAATGTCTCTGGCCAAATCCCTCCCTCTTTTGGTCAACTCTCCCATCTCCAACTCCTTGACCTCTCATCAAACTCTTTAACCGGTTCCATTCCTAATGAACTTGGAAACCTCTCTTCACTTCAGTTTCTTTTCTTGAACTCAAACAAACTCACAGGAACCATTCCTCAGCAACTTGCCAACCTTACCTCGCTTGAAGTTCTGTGCCTGCAAGATAATCTTCTCAACAGTTCAATACCATCACAGTTAGGATCATTGAAATCTCTACAGCAGTTTAGGATTGGTGGAAATCCATACCTCACTGGAGAGATTCCATCACAGTTAGGACTACTCACAAACCTCACCATATTTGGTGCAGCTGCTACTGGACTTTCTGGTTCCATTCCCTCCACATTTGGGAACTTGATCAATCTCCAAACTCTAGCACTTTATGATACTGATGTTTCCGGTTCAATACCACCGGAACTCGGGTCCTGTTCTGAGTTGAGAAATCTTTATTTGCACATGAATAAGCTCACTGGCTCTATTCCACCTCAGTTGGGGAAGCTGCCAAAGCTCACAAGTGTGCTTCTCTGGGGAAATGCATTATCTGGATCAATACCAGCTGAAATTTCTAACTGTTCATCACTTGTGGTGTTTGATGCCTCTTCAAATGAACTCACTGGTGAAATACCTGAGGATTTTGGGAAGCTTGTGGTCATGGAACAGCTTCATTTATCAGACAATTCCCTCTCAGGTAAAATACCATGGCAGTTGGGAAACTGCACAAGTCTTGCCACTGTTCAGCTTGACAAGAATCAGTTATCAGGTTCAATCCCATGGCAGGTTGGGAAGTTGAAATTCTTGCAGAGTTTTTTCTTGTGGGGTAACTCAGTTTCTGGAACCATACCACCCTCTTTTGGGAACTGCACAGAACTCTTTTCACTTGACCTTTCAAGGAACAAGCTCACAGGTTCAATCCCTGAAGAGATTTTCAGCTTGAAGAAGCTGAGTAAACTTCTGCTTCTTGGAAATTCTTTGACAGGAGGGTTGCCACCAAGTGTTGCAAATTGTGAATCTTTGGTGAGACTGCGGCTTGGAGAAAACCAGCTTTCAGGGAGCATTCCTAAAGAAATAGGCCAATTGCAGAACCTGGTGTTTCTTGACTTGTACATGAATCATTTCTCTGGAAGCTTACCAGTAGAGATTGCCAACATAACAGTTCTTGAGCTCTTGGATGTGCATAACAACCACATAACTGGAGAAATTCCGAATTTGCAGAAGCTAACTCTTCTTGATTTGAGTTACAACAACCTCTCTGGTGGCATACCCTCTGAGATTGGCTATTTTACAAGCTTAACCATTAGTTTGAACTTGAACTCGAATTCATTCACAGGAGAAATCCCAGAGTCAATGTCTGCGTTGACACAGTTACAGTCACTTGATCTTTCTCATAATATGTTTCACGGAGGAATTAAGGTTCTTGGTTCTCTCACCAGTCTCACTTCCCTCAATATCTCCTACAACAATTTCTCAGGTCCTATCCCGGTAACTCCATTCTTCAGAACTCTTTCTTTCAACTCATGTCTTCAGAACCCCCTTCTATGCCAGTCCATTGATGGCAATACATGTTCTTCTAGCCTGTATCAAAGAACTGGTATAAAATCTGCAAAAACCATAGCTTTTATAACTGTGATTCTAGCTTCAGTTGTGATCATTGTTGTTGCATCCTGGATTATAGCAACTCGTAGTAACAGGTATACAGTGGAAAAATCTTTGGGGGCATTGGCTTCAACATCAGGAGCTGAGGATTTCTCTTATCCTTGGACCTTCATTCCATTTCAAAAGCTAAACTTCAGCATAGATAACATCTTGGATTGCTTGAAGGATGAAAATGTGATCGGGAAGGGTTGCTCTGGTGTTGTCTACAAGTCTGAGATGCCTAATGGGGAGTTGATAGCAGTGAAGAAGCTTTGGAAAGCTAACAAAGAAGACGAAACACTGGACTCTTTCGCCGCGGAGATTCAGATTCTCGGGTACATCAGGCATAGGAACATTGTGAGGCTCCTGGGCTATTGTTCTAACAGGAGTGTCAAGCTGCTTCTTTACAATTTCATACCAAATGGTAATCTGAGACAGCTCTTGCAAGGGAACAGGAACTTAGACTGGGAAACCAGATACAAGATTGCTGTTGGAACAGCTCAAGGTCTTGCTTACCTTCATCATGATTGTGTCCCTCCCATTATTCACAGAGATGTTAAGTGCAATAACATACTTCTAGATTCCAAATATGAAGCATATCTCGCAGATTTTGGTCTTGCAAAGCTGATGAACTCACCAACTTATCATCAAGCAATGTCTAGGGTGGCTGGTTCTTATGGTTATATTGCCCCAGAGTATGGCTACTCAATGAACATAACTGAGAAGAGTGATGTCTACAGTTACGGAGTGGTTCTGCTAGAGATACTAAGCGGGCGAAGTGCTGTCGAATCCCACGTGGGAGATGGACAACACATAGTTGAGTGGGTGAAGAGAAAAATGGGGAGCTTTGAACCAGCTGTGTCAATACTAGACACAAAGCTCCAAGGTCTACCAGATCAAATGGTGCAAGAGATGCTCCAAACACTTGGAATTGCCATGTTTTGCGTGAACTCTTCGCCATCAGAACGCCCCACGATGAAGGAAGTGGTTGCATTGCTAATGGAGGTGAAGAGCCAACCTGAAGAGATGGGCAAAACCTCTCAACCTCTAATAAAGCACCCTTCAAATCAAAGCTAA 2784 0.43 MLQLLNLSSTNVSGQIPPSFGQLSHLQLLDLSSNSLTGSIPNELGNLSSLQFLFLNSNKLTGTIPQQLANLTSLEVLCLQDNLLNSSIPSQLGSLKSLQQFRIGGNPYLTGEIPSQLGLLTNLTIFGAAATGLSGSIPSTFGNLINLQTLALYDTDVSGSIPPELGSCSELRNLYLHMNKLTGSIPPQLGKLPKLTSVLLWGNALSGSIPAEISNCSSLVVFDASSNELTGEIPEDFGKLVVMEQLHLSDNSLSGKIPWQLGNCTSLATVQLDKNQLSGSIPWQVGKLKFLQSFFLWGNSVSGTIPPSFGNCTELFSLDLSRNKLTGSIPEEIFSLKKLSKLLLLGNSLTGGLPPSVANCESLVRLRLGENQLSGSIPKEIGQLQNLVFLDLYMNHFSGSLPVEIANITVLELLDVHNNHITGEIPNLQKLTLLDLSYNNLSGGIPSEIGYFTSLTISLNLNSNSFTGEIPESMSALTQLQSLDLSHNMFHGGIKVLGSLTSLTSLNISYNNFSGPIPVTPFFRTLSFNSCLQNPLLCQSIDGNTCSSSLYQRTGIKSAKTIAFITVILASVVIIVVASWIIATRSNRYTVEKSLGALASTSGAEDFSYPWTFIPFQKLNFSIDNILDCLKDENVIGKGCSGVVYKSEMPNGELIAVKKLWKANKEDETLDSFAAEIQILGYIRHRNIVRLLGYCSNRSVKLLLYNFIPNGNLRQLLQGNRNLDWETRYKIAVGTAQGLAYLHHDCVPPIIHRDVKCNNILLDSKYEAYLADFGLAKLMNSPTYHQAMSRVAGSYGYIAPEYGYSMNITEKSDVYSYGVVLLEILSGRSAVESHVGDGQHIVEWVKRKMGSFEPAVSILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPSERPTMKEVVALLMEVKSQPEEMGKTSQPLIKHPSNQS 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30210g00048 927 SMART serkin_6 630 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30210g00048 927 FunFam Piriformospora indica-insensitive protein 2 1 89 - -
Stsc30210g00048 927 MobiDBLite consensus disorder prediction 910 927 - -
Stsc30210g00048 927 Gene3D Phosphorylase Kinase; domain 1 607 707 - -
Stsc30210g00048 927 Pfam Leucine rich repeat 291 349 IPR001611 GO:0005515
Stsc30210g00048 927 Pfam Leucine rich repeat 2 60 IPR001611 GO:0005515
Stsc30210g00048 927 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 708 920 - -
Stsc30210g00048 927 SUPERFAMILY RNI-like 2 210 - -
Stsc30210g00048 927 Gene3D Ribonuclease Inhibitor 285 553 IPR032675 -
Stsc30210g00048 927 MobiDBLite consensus disorder prediction 908 927 - -
Stsc30210g00048 927 SUPERFAMILY Protein kinase-like (PK-like) 614 902 IPR011009 -
Stsc30210g00048 927 PANTHER LEUCINE RICH REPEAT KINASE 2 244 908 - -
Stsc30210g00048 927 FunFam Piriformospora indica-insensitive protein 2 330 426 - -
Stsc30210g00048 927 PRINTS Leucine-rich repeat signature 428 441 - -
Stsc30210g00048 927 PRINTS Leucine-rich repeat signature 26 39 - -
Stsc30210g00048 927 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 427 546 - -
Stsc30210g00048 927 SUPERFAMILY L domain-like 133 526 - -
Stsc30210g00048 927 ProSiteProfiles Protein kinase domain profile. 630 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30210g00048 927 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 611 707 - -
Stsc30210g00048 927 Gene3D Transferase(Phosphotransferase) domain 1 708 921 - -
Stsc30210g00048 927 Gene3D Ribonuclease Inhibitor 128 284 IPR032675 -
Stsc30210g00048 927 Pfam Protein kinase domain 632 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30210g00048 927 ProSiteProfiles Leucine-rich repeat profile. 410 432 IPR001611 GO:0005515
Stsc30210g00048 927 SMART LRR_typ_2 71 95 IPR003591 -
Stsc30210g00048 927 SMART LRR_typ_2 360 384 IPR003591 -
Stsc30210g00048 927 SMART LRR_typ_2 477 504 IPR003591 -
Stsc30210g00048 927 SMART LRR_typ_2 47 70 IPR003591 -
Stsc30210g00048 927 SMART LRR_typ_2 192 216 IPR003591 -
Stsc30210g00048 927 SMART LRR_typ_2 23 46 IPR003591 -
Stsc30210g00048 927 SMART LRR_typ_2 312 336 IPR003591 -
Stsc30210g00048 927 SMART LRR_typ_2 428 452 IPR003591 -
Stsc30210g00048 927 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 107 329 - -
Stsc30210g00048 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672|GO:0006468
Stsc30210g00048 927 ProSitePatterns Protein kinases ATP-binding region signature. 636 659 IPR017441 GO:0005524
Stsc30210g00048 927 Gene3D Ribonuclease Inhibitor 2 119 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30210g00048 Stsc-Chr30210 334964 338119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30210g00048 2 921 Receptor kinase-like Gene Family AT5G56040 44.241 0.0 779
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc30210g00048 Pkinase 6.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30210g00048 - - vra:106769750 1139.02