Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30210g00045 ATGGCGGCAGCGGCAGCGATTTCTGCACCGGTGGCTCAGTCAACGGCGGCTCCGGCGGCGGCATTGGGCGTAGGGCCATTCTCGAATGCATCCCTGTACGTAGGGGATCTGGAGGCGAACGTGAACGAGGCGCAGCTTTATGATCTGTTCAGTCAGATTGCTCCGGTTGTCTCGATTAGGGTTTGCAGGGATCTTACGAAGCGATACTCTCTCGGTTACGCTTATGTCAACTATTCCAGTTATGAACATGCTGCAAATGCTATGGAGCTTCTGAACTTCACCCATTTGAATGGGAAACCCATTAGAATTATGTTTTCCCAAAGCATTCGGAAAAGCGGATATGCCAATGTGTTCATCAAGAATCTTGACACTGCAATCGACAACAAGGCATTACATGACACATTTGTTGCTTTTGGAACTGTGCTTTCTTGCAAGGTTGCACTTGATAGCAATGGCAATTCAAAGGGCTATGGTTTTGTACAATTTGAAAAAGAAGAAGCTGCTCAGAATGCCATCAAACAGTTGAATGGCATGCTGATAAATGATAAACAGGTTTTTGTGGGACTCTTTGTTAGGCGCCAGGAAAGGGCTCGAACAAATGAATCACCAAAGTTCACTAATGTGTATGTGAAAAATTTGCATGAAACACAAACGGATGATGAGTTGAAGCAACTATTTAGCCCATATGGTACAATAACTAGTGCAACAGTTATGAAAGATATGAATGGGAAGTCTAGATGTTTTGGTTTTGTTAATTTCCAGAGTCCAGATTCAGCAGCTGTTGCACTTGAGAAGTTAAATGGAACTACAATCAACGATGACAGGGTTTTATTTGTAGGCAGAGCTCAGAGGAAAGCTGAAAGAGAGGCCGAGTTGAAAGCCAAATTTGAACAGGAAAGGTTTAGTAGATATGAGAAGTTACAAGGTGCGAACTTGTACTTGAAAAATCTTGATGACAGCATCAATGATGAGAGGTTGAAGGATCTGTTTTCTGAATTTGGAACAATTACATCTTGCAAGGTGATGCTTGATCCACACGGGCATAGTAGGGGGTCTGGTTTTGTTGCCTTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGAAAGTTGGTTGGGCGGAAGCCTCTGTATGTTGCTGTTGCCCAGCGCAAAGATGAGAGGAAGGCTCGTCTACAGGCTCAGTTTGCTCAAATGCAGTCACCCGGTGGAATGTCACCTATGCCCTCAGGAATTCCTGGGTATCATCCAGGAGCACCAAGGCTTGCCCCTCAACAGATGTATTTTGGACAAGGAACACCCGGCTTCATGCCGCCACAGCCTGCTGGTTTTGGTTTCCAGCAGCAAATGTTGCCTGGAATGCGGCCTGGGGTTGCTCCAAATTTTGTGATGCCATACCACCTTCAGAGACAGGGTCAGCCCGGGCAGAGGATGGGCATTCGACGAGGGGGAAACCTCCAACAAGTGCAGCAGAACCCGATGATGCATCGTAACTCCAATCAAGGGTTTAGATATATGGGCAATGGCAGAAATGGTATGGATCCATCTGGTCCTCAAGGTCTAGTTGGTCCAATGATGCCCATGTCCTTTGATGGATCTGTATCTCCTCTTGATAACCAGCGCCCTGGAACATTGTCTACCACCCTTGCCTCTGCTCTGGCTTCTGCAACCCCAGAAAATCAGCGAATGATGCTGGGTGAACATCTGTATCCTCTTGTGGAGCGTCTTACTCCGACTCAACACACGGCAAAGGTGACAGGCATGTTGCTGGAAATGGACCAGTCAGAGGTAATCCATCTCATTGAGTCCCCTGAGGACCTGAAGATTAAGGTCTCCGAGGCAATGCAGGTCCTTCACGAAGCTGCAACGGGTTCTGATGTTGGTGATCAGCTGGGTTCATTGTCATTGAATGAATGA 1926 0.4663 MAAAAAISAPVAQSTAAPAAALGVGPFSNASLYVGDLEANVNEAQLYDLFSQIAPVVSIRVCRDLTKRYSLGYAYVNYSSYEHAANAMELLNFTHLNGKPIRIMFSQSIRKSGYANVFIKNLDTAIDNKALHDTFVAFGTVLSCKVALDSNGNSKGYGFVQFEKEEAAQNAIKQLNGMLINDKQVFVGLFVRRQERARTNESPKFTNVYVKNLHETQTDDELKQLFSPYGTITSATVMKDMNGKSRCFGFVNFQSPDSAAVALEKLNGTTINDDRVLFVGRAQRKAEREAELKAKFEQERFSRYEKLQGANLYLKNLDDSINDERLKDLFSEFGTITSCKVMLDPHGHSRGSGFVAFSTPEEASKALNEMNGKLVGRKPLYVAVAQRKDERKARLQAQFAQMQSPGGMSPMPSGIPGYHPGAPRLAPQQMYFGQGTPGFMPPQPAGFGFQQQMLPGMRPGVAPNFVMPYHLQRQGQPGQRMGIRRGGNLQQVQQNPMMHRNSNQGFRYMGNGRNGMDPSGPQGLVGPMMPMSFDGSVSPLDNQRPGTLSTTLASALASATPENQRMMLGEHLYPLVERLTPTQHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLHEAATGSDVGDQLGSLSLNE 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30210g00045 641 PANTHER RNA BINDING PROTEIN 29 111 - -
Stsc30210g00045 641 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 284 IPR000504 GO:0003723
Stsc30210g00045 641 Gene3D - 190 304 IPR012677 -
Stsc30210g00045 641 Gene3D - 306 409 IPR012677 -
Stsc30210g00045 641 Coils Coil 279 299 - -
Stsc30210g00045 641 CDD RRM3_I_PABPs 205 285 - -
Stsc30210g00045 641 CDD RRM4_I_PABPs 309 387 - -
Stsc30210g00045 641 SUPERFAMILY PABC (PABP) domain 492 625 IPR036053 GO:0003723
Stsc30210g00045 641 SUPERFAMILY RNA-binding domain, RBD 205 391 IPR035979 GO:0003676
Stsc30210g00045 641 Gene3D - 547 626 - -
Stsc30210g00045 641 SMART rrm1_1 311 383 IPR000504 GO:0003723
Stsc30210g00045 641 SMART rrm1_1 116 188 IPR000504 GO:0003723
Stsc30210g00045 641 SMART rrm1_1 207 280 IPR000504 GO:0003723
Stsc30210g00045 641 SMART rrm1_1 31 104 IPR000504 GO:0003723
Stsc30210g00045 641 FunFam Polyadenylate-binding protein 197 292 - -
Stsc30210g00045 641 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Stsc30210g00045 641 Gene3D - 116 189 IPR012677 -
Stsc30210g00045 641 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Stsc30210g00045 641 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Stsc30210g00045 641 FunFam Polyadenylate-binding protein 109 196 - -
Stsc30210g00045 641 Gene3D - 25 115 IPR012677 -
Stsc30210g00045 641 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 621 IPR006515 GO:0003723
Stsc30210g00045 641 FunFam Polyadenylate-binding protein 545 627 - -
Stsc30210g00045 641 SMART rrm2_1 207 279 IPR003954 GO:0003676
Stsc30210g00045 641 SMART rrm2_1 31 104 IPR003954 GO:0003676
Stsc30210g00045 641 SMART rrm2_1 311 383 IPR003954 GO:0003676
Stsc30210g00045 641 SMART rrm2_1 116 188 IPR003954 GO:0003676
Stsc30210g00045 641 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Stsc30210g00045 641 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 184 IPR000504 GO:0003723
Stsc30210g00045 641 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 275 IPR000504 GO:0003723
Stsc30210g00045 641 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 380 IPR000504 GO:0003723
Stsc30210g00045 641 SUPERFAMILY RNA-binding domain, RBD 29 195 IPR035979 GO:0003676
Stsc30210g00045 641 CDD RRM2_I_PABPs 113 188 IPR045305 -
Stsc30210g00045 641 FunFam Polyadenylate-binding protein 293 398 - -
Stsc30210g00045 641 Pfam Poly-adenylate binding protein, unique domain 556 621 IPR002004 GO:0003723
Stsc30210g00045 641 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 548 626 IPR002004 GO:0003723
Stsc30210g00045 641 SMART poly_2 560 624 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30210g00045 Stsc-Chr30210 318685 322759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30210g00045 29 635 Eukaryotic Initiation Factors Gene Family AT1G71770 59.135 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30210g00045 K13126 - gmx:100783163 1022.69