Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30210g00035 ATGGGTGCTGAAGCTGGTGCAACCGAGTGTTTCAGTAAGGCTATGGCGTCGATGCCTGGGTTTCGGTTCCATCCCACGGATGAGGAGCTGGTTATGTACTATCTGAAGAGGAAGATATGTGGGAAGAAGCTGAAACTCGACGTGATTCTGGAAACCGATGTTTACAAGTGGGATCCTGAGGAATTGCCAGGGCTCTCTGTACTAAGGACTGGAGATAGGCAATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCTAATGGTGCGAGGTCAAACCGAGCAACAAGGCAAGGGTACTGGAAAGCAACAGGAAAGGATCGTAATGTGACCTGCAATTCTCGGTCAGTTGGAGTGAAGAAGACTCTGGTTTTCTATAGAGGCAGAGCTCCTAATGGTGAGCGGACTGATTGGGTTATGCACGAATACACCATGGATGAAGAAGAGCTCAATAGGTGCCAGGGTATTAAGGACTATTTTGCACTTTACAAGCTATACAAGAAAAGTGGACCTGGTCCTAAAAATGGGGAACAGTATGGTGCGCCATTTAAAGAAGAGGAGTGGGCTGATGATGAATGTGTAGATTTCAATATTAGCTCAGCTGACCGGGAGGTGGCAAATACTGTCCCTGTTAATCAGCTGCCTCCTTTGGCTGATGATGAAGTCACTGATATGATTAATCAAATTTTGGATGATGAGCTTGCCCTTGACCAGCAATTTGGTGATGGCCTTCTTGAATTTCCTCAGGTTGTTGCTGAAGAAACACAAAGTGCTGTGGTGGATCAATTCTCTGAGGCAGTGACATTCCATGAGGCCAATGGTATTTTCCCCTCGACCAGTCAGCACTATGATGCGCAGAGTGTTGACTTCAATCAGTCTTTTGCTTCTCACCTTCAAGGTTCAGAAGTTGTCAATACTCCCAACCTTCAAGTAGAGGACTATAACTTTCAGGGGGATGACTTCTTGGAAATCAATGATCTCAATGGTTCTGAACTTCCATTGTCAAATATGGGAACACCAGTGGAGAACCTGCAGTTTGAAGATGGTTTGAGTGAACTTGATCTGTTCCAAGATGTGGAGATGTTTCTTCGTGACTTGGGACCAATCAACGAGGAAGCCATTCCACATTCGTATATGAATAATGCCTCTGGAAGCAACATTGAAAATCAGAATTATCACTTGCTGCCCAATCCAGAGGATGCTACTCAAAATGTTCATGAATTCTGGATGAATGATGAAAGAAACACCCTGAGTCCCTTTGAAGGCTTTGATGGTTCTTTCTCTCAACAAAACCCAGGTGCTGTATGTGACTCTGGGAGTTTTCCTACTACTGAAAGCTATGATAATCAAAGTAGCACTGCAGAAGATGTTGCTACAAGTAGATTTTCTTCGGCTCTCTGGTCCTTTGTAGAGTCAATACCTACGACTCCTGCATCAGCTGCAGAAAATGCACTGGTGAATCGGGCTTTGAATCGAATGTCTAGCTTCAGCCGAGTGAAGATTAATATCAAGCCAACAAACACAGCTGCAGGTAAAGACACTGCAACTACAAAGAGAGTGGGCAGAAAAGGATTTTCATTCCTTTTCTTCCCAATTCTTATAGCTTTATGTGCTTTCTTGTGGATTTCTCTTGGAACTTTTAGATTATTGGGGAGATGTGTTTCTCCTTGA 1668 0.4388 MGAEAGATECFSKAMASMPGFRFHPTDEELVMYYLKRKICGKKLKLDVILETDVYKWDPEELPGLSVLRTGDRQWFFFCHRDRKYPNGARSNRATRQGYWKATGKDRNVTCNSRSVGVKKTLVFYRGRAPNGERTDWVMHEYTMDEEELNRCQGIKDYFALYKLYKKSGPGPKNGEQYGAPFKEEEWADDECVDFNISSADREVANTVPVNQLPPLADDEVTDMINQILDDELALDQQFGDGLLEFPQVVAEETQSAVVDQFSEAVTFHEANGIFPSTSQHYDAQSVDFNQSFASHLQGSEVVNTPNLQVEDYNFQGDDFLEINDLNGSELPLSNMGTPVENLQFEDGLSELDLFQDVEMFLRDLGPINEEAIPHSYMNNASGSNIENQNYHLLPNPEDATQNVHEFWMNDERNTLSPFEGFDGSFSQQNPGAVCDSGSFPTTESYDNQSSTAEDVATSRFSSALWSFVESIPTTPASAAENALVNRALNRMSSFSRVKINIKPTNTAAGKDTATTKRVGRKGFSFLFFPILIALCAFLWISLGTFRLLGRCVSP 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30210g00035 555 SUPERFAMILY NAC domain 15 167 IPR036093 GO:0003677|GO:0006355
Stsc30210g00035 555 FunFam Nac domain-containing protein 86 26 170 - -
Stsc30210g00035 555 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 271 - -
Stsc30210g00035 555 Gene3D NAC domain 26 169 IPR036093 GO:0003677|GO:0006355
Stsc30210g00035 555 Pfam No apical meristem (NAM) protein 19 143 IPR003441 GO:0003677|GO:0006355
Stsc30210g00035 555 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30210g00035 Stsc-Chr30210 262294 266221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30210g00035 3 553 NAC Transcription Factor Family AT1G34190 43.027 1.87e-134 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc30210g00035 NAM 1.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30210g00035 - - gmx:100794925 783.482