Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30210g00034 | ATGGCCTCCTCCCAGCATCGCTGCGTTTTTGTTGGCAATATTCCATATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGTCCTGTAGTCTCATTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAGGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTTTGAGTGCTCGTCGGAATCTTCAGGGTTATGAAATTAACGGCCGCCAATTGCGTGTTGACTTTGCTGAAAATGATAAAGGGAATGATAGAAATAGAGAGCAGGGTCGTGGAGGGCCTGGGTTGTCAGCAAACGTTGACCCTCAAAAACAAGTAGGAAGCAGCTCAGTTGTCCATGGGGATGCTGCTCATCATCAACCTATTGGTCTTCATATTGCCATTACAGCTGCGTCTGTCATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCATCCAATCAGCTCAAAATGGTTTGCAGAGTCAGTCATCACTGGCACATGATCCCTTAACTCTGCATCTGGCTAAAATGTCAAGGAATCAGTTAAATGAGATTATCTCTGAGGTCAAGGGAATGGCCACACAGAATAAGGACATGGCTCGGCAGCTGTTGCTTTCAAGACCACAGTTACCAAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACCTCCCAAGTGTTGCAAATGCCAAACCTTAGAATGATTTCGGATCAGCCCTCACAACCTTCAGTAAATGAAGGCCAGCTTGGTCAGCCAGCATTGGTTCAGACTCTGTCTGGCCCACCCCAGAGCTTGGGGCAGAGTACATTGACACCTTATGTTCAAGAAGGTCAAGCCAGCGTAATGCCCCATAATCCTTTGGTTCCTAATCAATTGAATACACATCCAAGGCCTCTGTTGCAGCCTAGAATGCCACTTCAACAACATTCAATCAACCATGTTGGACAGTTGGGAACTCTGTCAGGGCAGTCAAATTTAATGCCTCCTTCAGCACGACCCCAGTCATTGGGTGGTTTGTCTGTGAGGCCCTCAGTTCAACCTTCAACATCGACTGCCTCAAACCAGCAAAGACATGCCCCATTGCCACCACATTCAGCACTTGTTGGAAGCTCAACTGTAGGACATAATATTCAAATGGTTCGACCAGATGCAAGCTTTCAGCCTGGCCCCTCTGTATCATCAGGAATTCCTCACTTAATTAGTAAGGAAGGTGATAGATCTGCATATTCAAACATTCCTTTGGGAGTAGAGAAAACAAATATGGTTCATGGTTTGTCCGAATCATTTGGTCGCCCTTCAAAGCTCATGAAGTTGGATGAGGGAAGGAGCATGCCTTTTCCTTTAGCCGATGTGCCTGTGACCAATGGTTCATCCCACATTCTTGGAAGTAACTCATTGGCTTCTCTTGCAGCTCCCAAAACAGAAGTGCGATACCCCGAGCAACAATCTGCTCAGCTTCCAGCAGATGTAGAGTCTGCTTTACTGCAACAAGTGTTGAATCTAACGCCGGAGCAATTGAGTTCGCTGCCACCAGAGCAGCAACAACAGGTCATTCAGCTTCAGCAGGCTCTACGGCGAGATCAGATGCAGCCCTCATAG | 1602 | 0.4688 | MASSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGLSANVDPQKQVGSSSVVHGDAAHHQPIGLHIAITAASVMTAALGGAQFGIQSAQNGLQSQSSLAHDPLTLHLAKMSRNQLNEIISEVKGMATQNKDMARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRMISDQPSQPSVNEGQLGQPALVQTLSGPPQSLGQSTLTPYVQEGQASVMPHNPLVPNQLNTHPRPLLQPRMPLQQHSINHVGQLGTLSGQSNLMPPSARPQSLGGLSVRPSVQPSTSTASNQQRHAPLPPHSALVGSSTVGHNIQMVRPDASFQPGPSVSSGIPHLISKEGDRSAYSNIPLGVEKTNMVHGLSESFGRPSKLMKLDEGRSMPFPLADVPVTNGSSHILGSNSLASLAAPKTEVRYPEQQSAQLPADVESALLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS | 533 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30210g00034 | 533 | MobiDBLite | consensus disorder prediction | 282 | 298 | - | - | |
Stsc30210g00034 | 533 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 102 | IPR035979 | GO:0003676 | |
Stsc30210g00034 | 533 | Gene3D | - | 1 | 115 | IPR012677 | - | |
Stsc30210g00034 | 533 | FunFam | Related to Cleavage stimulation factor | 486 | 528 | - | - | |
Stsc30210g00034 | 533 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 79 | IPR000504 | GO:0003723 | |
Stsc30210g00034 | 533 | Gene3D | - | 486 | 532 | IPR038192 | - | |
Stsc30210g00034 | 533 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
Stsc30210g00034 | 533 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 | |
Stsc30210g00034 | 533 | MobiDBLite | consensus disorder prediction | 81 | 119 | - | - | |
Stsc30210g00034 | 533 | PANTHER | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 | 3 | 529 | - | - | |
Stsc30210g00034 | 533 | Pfam | Transcription termination and cleavage factor C-terminal | 493 | 527 | IPR026896 | GO:0031124 | |
Stsc30210g00034 | 533 | MobiDBLite | consensus disorder prediction | 319 | 371 | - | - | |
Stsc30210g00034 | 533 | MobiDBLite | consensus disorder prediction | 282 | 302 | - | - | |
Stsc30210g00034 | 533 | MobiDBLite | consensus disorder prediction | 319 | 361 | - | - | |
Stsc30210g00034 | 533 | FunFam | Cleavage stimulating factor 64 | 1 | 116 | - | - | |
Stsc30210g00034 | 533 | Pfam | Hinge domain of cleavage stimulation factor subunit 2 | 162 | 229 | IPR025742 | - | |
Stsc30210g00034 | 533 | FunFam | Cleavage stimulating factor 64 | 156 | 231 | - | - | |
Stsc30210g00034 | 533 | MobiDBLite | consensus disorder prediction | 506 | 533 | - | - | |
Stsc30210g00034 | 533 | CDD | RRM_CSTF2_RNA15_like | 7 | 83 | - | - | |
Stsc30210g00034 | 533 | Gene3D | - | 157 | 231 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30210g00034 | Stsc-Chr30210 | 254365 | 260120 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30210g00034 | 9 | 82 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 31.081 | 1.62e-07 | 52.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30210g00034 | K14407 | - | gmx:100794399 | 747.273 |