Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30210g00034 ATGGCCTCCTCCCAGCATCGCTGCGTTTTTGTTGGCAATATTCCATATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGTCCTGTAGTCTCATTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAGGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTTTGAGTGCTCGTCGGAATCTTCAGGGTTATGAAATTAACGGCCGCCAATTGCGTGTTGACTTTGCTGAAAATGATAAAGGGAATGATAGAAATAGAGAGCAGGGTCGTGGAGGGCCTGGGTTGTCAGCAAACGTTGACCCTCAAAAACAAGTAGGAAGCAGCTCAGTTGTCCATGGGGATGCTGCTCATCATCAACCTATTGGTCTTCATATTGCCATTACAGCTGCGTCTGTCATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCATCCAATCAGCTCAAAATGGTTTGCAGAGTCAGTCATCACTGGCACATGATCCCTTAACTCTGCATCTGGCTAAAATGTCAAGGAATCAGTTAAATGAGATTATCTCTGAGGTCAAGGGAATGGCCACACAGAATAAGGACATGGCTCGGCAGCTGTTGCTTTCAAGACCACAGTTACCAAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACCTCCCAAGTGTTGCAAATGCCAAACCTTAGAATGATTTCGGATCAGCCCTCACAACCTTCAGTAAATGAAGGCCAGCTTGGTCAGCCAGCATTGGTTCAGACTCTGTCTGGCCCACCCCAGAGCTTGGGGCAGAGTACATTGACACCTTATGTTCAAGAAGGTCAAGCCAGCGTAATGCCCCATAATCCTTTGGTTCCTAATCAATTGAATACACATCCAAGGCCTCTGTTGCAGCCTAGAATGCCACTTCAACAACATTCAATCAACCATGTTGGACAGTTGGGAACTCTGTCAGGGCAGTCAAATTTAATGCCTCCTTCAGCACGACCCCAGTCATTGGGTGGTTTGTCTGTGAGGCCCTCAGTTCAACCTTCAACATCGACTGCCTCAAACCAGCAAAGACATGCCCCATTGCCACCACATTCAGCACTTGTTGGAAGCTCAACTGTAGGACATAATATTCAAATGGTTCGACCAGATGCAAGCTTTCAGCCTGGCCCCTCTGTATCATCAGGAATTCCTCACTTAATTAGTAAGGAAGGTGATAGATCTGCATATTCAAACATTCCTTTGGGAGTAGAGAAAACAAATATGGTTCATGGTTTGTCCGAATCATTTGGTCGCCCTTCAAAGCTCATGAAGTTGGATGAGGGAAGGAGCATGCCTTTTCCTTTAGCCGATGTGCCTGTGACCAATGGTTCATCCCACATTCTTGGAAGTAACTCATTGGCTTCTCTTGCAGCTCCCAAAACAGAAGTGCGATACCCCGAGCAACAATCTGCTCAGCTTCCAGCAGATGTAGAGTCTGCTTTACTGCAACAAGTGTTGAATCTAACGCCGGAGCAATTGAGTTCGCTGCCACCAGAGCAGCAACAACAGGTCATTCAGCTTCAGCAGGCTCTACGGCGAGATCAGATGCAGCCCTCATAG 1602 0.4688 MASSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGLSANVDPQKQVGSSSVVHGDAAHHQPIGLHIAITAASVMTAALGGAQFGIQSAQNGLQSQSSLAHDPLTLHLAKMSRNQLNEIISEVKGMATQNKDMARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRMISDQPSQPSVNEGQLGQPALVQTLSGPPQSLGQSTLTPYVQEGQASVMPHNPLVPNQLNTHPRPLLQPRMPLQQHSINHVGQLGTLSGQSNLMPPSARPQSLGGLSVRPSVQPSTSTASNQQRHAPLPPHSALVGSSTVGHNIQMVRPDASFQPGPSVSSGIPHLISKEGDRSAYSNIPLGVEKTNMVHGLSESFGRPSKLMKLDEGRSMPFPLADVPVTNGSSHILGSNSLASLAAPKTEVRYPEQQSAQLPADVESALLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30210g00034 533 MobiDBLite consensus disorder prediction 282 298 - -
Stsc30210g00034 533 SUPERFAMILY RNA-binding domain, RBD 4 102 IPR035979 GO:0003676
Stsc30210g00034 533 Gene3D - 1 115 IPR012677 -
Stsc30210g00034 533 FunFam Related to Cleavage stimulation factor 486 528 - -
Stsc30210g00034 533 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Stsc30210g00034 533 Gene3D - 486 532 IPR038192 -
Stsc30210g00034 533 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Stsc30210g00034 533 SMART rrm1_1 8 81 IPR000504 GO:0003723
Stsc30210g00034 533 MobiDBLite consensus disorder prediction 81 119 - -
Stsc30210g00034 533 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 529 - -
Stsc30210g00034 533 Pfam Transcription termination and cleavage factor C-terminal 493 527 IPR026896 GO:0031124
Stsc30210g00034 533 MobiDBLite consensus disorder prediction 319 371 - -
Stsc30210g00034 533 MobiDBLite consensus disorder prediction 282 302 - -
Stsc30210g00034 533 MobiDBLite consensus disorder prediction 319 361 - -
Stsc30210g00034 533 FunFam Cleavage stimulating factor 64 1 116 - -
Stsc30210g00034 533 Pfam Hinge domain of cleavage stimulation factor subunit 2 162 229 IPR025742 -
Stsc30210g00034 533 FunFam Cleavage stimulating factor 64 156 231 - -
Stsc30210g00034 533 MobiDBLite consensus disorder prediction 506 533 - -
Stsc30210g00034 533 CDD RRM_CSTF2_RNA15_like 7 83 - -
Stsc30210g00034 533 Gene3D - 157 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30210g00034 Stsc-Chr30210 254365 260120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30210g00034 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.62e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30210g00034 K14407 - gmx:100794399 747.273