Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30210g00024 ATGGGAGGAGTAGCTTGGCGAAATGGAAGAAACCAAATGGGCCCTGTTCCAATTCCAGGGCCCAAAGGGTTCCCAGTCTTTGGTATCTTATTCCACTTGAATCATGGCCTTCCACACCGAACCCTAGCTTCCATCGCTTCCACCCTCTCCGCTACACAACTCATGGCCTTCAGCTTAGGCTCCACACCTGCGGTTATCACCTCAAACCCTAATATCGCACGCGAAATCTTGAATTCACCCTATTTCGCGGATCGTCCCATTAAAGAATCCGCAAAAAGCTTGATGTTCAATCGCGCTATTGGGTTTGCACCCAACGGTGCATACTGGCGTTCACTTCGTAAGGTTGCATCCATCCATCTGTTTTCTCCTAGGCGCATCGCGGCCCATGAAGCTTGTCGCTTGCATGATTGCGCCGCCATGTTGCAAGCCGTGGCTCAAGAACAGTCACAAAATGGAGTTGTTTTCTTAAGAAAACACCTCCAAGATGCGGCTCTCAACAACATTATGGGAACCGTTTTCGGAAAAAGGTACAACTTTGAAGAACAAAGCGAGAATAGTAGCTATGAGCAAGTTGAAGAGCTTCGTGAGATGGTGAGGGAAGGGTTTGAGCTCTTAGGAGCTTTCAACTTGTGTGATTATGTGCCATGGATGAGGTTCTTCTATGACCCTTTTCACATCAAAGAACGGTGCTCTTCTCTTACTCCTCGAGTGAAGAGGTTTGTGAAGAGGGTTTTGGATGAACACCGAATGGTGGGTCCGTACAAGAAGAATATTTCTGATGGATCAGACTTCGTGGATGTGCTTCTCTCATTGGAAGGGGATGAGAAGCTCCAAGATGACGACATGATTGCAGTTTTATGGGAGATGATATTCCGTGGCACAGACACAACAGCACTTCTAACAGAATGGGTAATGGCGGAGCTTGTTTTGAACCAACAAATTCAAGCCAGGCTTCGCAACGAGCTTCACAATGCTTTTGGGGAGGACAATAACCACCTTACATATGCTGACGTGGCAAAACTAACTTATCTCGATGCCATCGTGAAAGAGACATTGCGGTTACACCCAATCGGTCCACTCCTTTCGTGGGCCCGCTTGTCCACCTCAGATGTCCACCTCAGCAACGGCATGGTGGTCCCTGCAAACACCACCACAATGGTGAACATGTGGGCCATAACTCACGACTCCAACGTGTGGGCGGATCCATTGAAATTTAAACCTGAGAGATTTTTGAAGGGTGAAGGAGGCATTGACTTTGATATGAAGGGCGTTGACCTTAGGCTTGCACCATTCGGTGCTGGGCGAAGGGTTTGCCCTGGCAAGAACCTTGGGCTTGCCACTGTGACCCTTTGGGTGGCTAAGTTGGTTCACCGCTTTGAATGGCTACAAGACATGGCTAACCCTGTTGACCTCACCGAGGTGCTCAAGCTTTCTTGTGAGATGAAAAGCCCTCTCAAAGTTGTGGCTATCCCTAGGGTTGCTTAA 1485 0.4855 MGGVAWRNGRNQMGPVPIPGPKGFPVFGILFHLNHGLPHRTLASIASTLSATQLMAFSLGSTPAVITSNPNIAREILNSPYFADRPIKESAKSLMFNRAIGFAPNGAYWRSLRKVASIHLFSPRRIAAHEACRLHDCAAMLQAVAQEQSQNGVVFLRKHLQDAALNNIMGTVFGKRYNFEEQSENSSYEQVEELREMVREGFELLGAFNLCDYVPWMRFFYDPFHIKERCSSLTPRVKRFVKRVLDEHRMVGPYKKNISDGSDFVDVLLSLEGDEKLQDDDMIAVLWEMIFRGTDTTALLTEWVMAELVLNQQIQARLRNELHNAFGEDNNHLTYADVAKLTYLDAIVKETLRLHPIGPLLSWARLSTSDVHLSNGMVVPANTTTMVNMWAITHDSNVWADPLKFKPERFLKGEGGIDFDMKGVDLRLAPFGAGRRVCPGKNLGLATVTLWVAKLVHRFEWLQDMANPVDLTEVLKLSCEMKSPLKVVAIPRVA 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30210g00024 494 Pfam Cytochrome P450 19 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30210g00024 494 SUPERFAMILY Cytochrome P450 18 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30210g00024 494 CDD CYP78 50 485 - -
Stsc30210g00024 494 PANTHER CYTOCHROME P450 78A7-RELATED 2 492 - -
Stsc30210g00024 494 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30210g00024 494 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30210g00024 494 PRINTS E-class P450 group I signature 388 412 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30210g00024 494 PRINTS E-class P450 group I signature 281 298 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30210g00024 494 PRINTS E-class P450 group I signature 163 181 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30210g00024 494 PRINTS E-class P450 group I signature 345 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30210g00024 494 PRINTS E-class P450 group I signature 301 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30210g00024 494 Gene3D Cytochrome P450 6 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30210g00024 494 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Stsc30210g00024 494 PRINTS P450 superfamily signature 438 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30210g00024 494 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30210g00024 494 PRINTS P450 superfamily signature 292 309 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30210g00024 494 PRINTS P450 superfamily signature 346 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30210g00024 494 FunFam Cytochrome P450 78A5 10 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30210g00024 Stsc-Chr30210 190042 192143 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30210g00024 2 488 Cytochrome P450 AT5G09970 67.418 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30210g00024 K20619 - qsa:O6P43_008036 721.079