Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30210g00002 ATGTCTACAGCAACACAAAAGGCAGCGTTTGGTGGCGTAGAAACTCCCAATGGAGACTCACCCAACTCAACCGCTCCACCCAAACACCCCCCTCGAGAATCCCGTGACATTCATCCTTTCATGTCCCCTTCTTACCCAATCACTCTCAAGTTCATGGACGTGGGATACCGGATAAAGATAGAGAACAAGCAAGGGAAAGGAAGCTGCATTAAGAAACTTTTCGCCACTGATCGCGAGTCACCAACACCGTCCGATCCAAGAAGATCAACGGTGCTGCAAGAGCGAACAATACTAAACGGAGTAACAGGTATAGCGTACCCGGGAGAGATCCTAGCCATCCTTGGTCCATCAGGAAGCGGCAAATCAACGCTCCTAAACGCTCTTGCAGGGAGACTCCATGGTCACGGCCTCACCGGAACAATTCTCGCAAACTCATCCAAGCTCACAAAACCGATTCTCCGCCGAGCCGGATTCGTCACTCAGGACGACGTGCTCTACCCGAACCTCACCGTCCGCGAAACCCTAGTCTTCTGCGCCATGCTCCGCCTCCCTCGGACGCTGCCACGGGAGGCGAAGATCGCGGCGGCGGAAACGGCGATCGCGGAGCTTGGACTAGGCAAGTGCGAGGACACAATAATCGGAAACAGCTTCATCCGCGGCGTCTCCGGCGGCGAGAGGAAGCGCGTGAGCATCGCGCATGAGATGCTGGTGGATCCGAGCTTGCTGCTTCTGGACGAGCCGACGTCGGGGCTCGACTCCACGTCGGCGCACCGCCTCATTACGGTGCTCGGTTCGCTGGCGAAGAAGGGGAAGACAGTGGTGACGTCGGTGCACCAGCCGTCGAGCCGCGTGTTCCAGATGTTCGATAAGGTTCTGGTGCTCTCCGAAGGGAACTGCCTCTACTTCGGCAAAGGATGCGAAGCCATGCGGTACTTCGAGTCGGTTGGTTTCGTGCCATCTTTTCCGATGAACCCCGCCGATTTTCTTCTCGATCTCGCTAACGGTGTTAGCCATATTGATGGTGTAAGTGAAAGAGATAAGCCAAACATAAGGCAGAACCTAATTCATTCATATAACACAACATTAGCTCCAAAGGTAAAAGCTTTATGCATGGACACTCGCAACAATCCTACAAAGAACACACACCCTATGGGAAGAAGCACCTCATCTTCCAAAGAACGCAGATACAGTGACAGGGTCAGCTTCTTAGATTGGTTCAACCAATTCAGCATACTCTTCCAAAGAAGCCTCAAAGAGAGAAAGCATGAATCATTCAACACTCTGAGAGTGTTCCAAGTCATTGCAGCTGCACTATTAGCAGGCCTAATGTGGTGGCACTCAGACTACAGAAATGTTCAGGACAGGCTTGGCCTACTTTTCTTCATTTCAATCTTCTGGGGTGTATTCCCATCTTTCAACTCTGTTTTCGCATTCCCCCAAGAACGCGCCATCTTCATGAAGGAAAGGGCCTCTGGAATGTACACATTGTCATCCTATTTCATGTCGCGAATCGTGGGCGATCTTCCAATGGAGCTTATCCTGCCCACAATTTTCCTCATTGTGACATATTGGATGGGAGGCCTAAAGCCTGATCTGGTGGCATTTCTATTGACATGGTTGGTCATCCTTGGATATGTCCTTGTCTCGCAGGGTCTCGGACTCGCCTTAGGCGCGGCGATAATGGATGCCAAACAAGCTTCCACGGTTGCAGCAGTGACAATGCTAGCATTTGTTCTAACAGGTGGATACTATGTCCATAAGGTGCCTGCATGCATGGCTTGGATCAAATACATATCCACAACATTTTACTGTTATAGGCTTCTGACTAGGATTCATTACAAAGAAGGTGATGATGATTTTGAAGAGAAAAGGATGGATCAATTGGTTGGCGAGTAG 1896 0.5074 MSTATQKAAFGGVETPNGDSPNSTAPPKHPPRESRDIHPFMSPSYPITLKFMDVGYRIKIENKQGKGSCIKKLFATDRESPTPSDPRRSTVLQERTILNGVTGIAYPGEILAILGPSGSGKSTLLNALAGRLHGHGLTGTILANSSKLTKPILRRAGFVTQDDVLYPNLTVRETLVFCAMLRLPRTLPREAKIAAAETAIAELGLGKCEDTIIGNSFIRGVSGGERKRVSIAHEMLVDPSLLLLDEPTSGLDSTSAHRLITVLGSLAKKGKTVVTSVHQPSSRVFQMFDKVLVLSEGNCLYFGKGCEAMRYFESVGFVPSFPMNPADFLLDLANGVSHIDGVSERDKPNIRQNLIHSYNTTLAPKVKALCMDTRNNPTKNTHPMGRSTSSSKERRYSDRVSFLDWFNQFSILFQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDYRNVQDRLGLLFFISIFWGVFPSFNSVFAFPQERAIFMKERASGMYTLSSYFMSRIVGDLPMELILPTIFLIVTYWMGGLKPDLVAFLLTWLVILGYVLVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHKVPACMAWIKYISTTFYCYRLLTRIHYKEGDDDFEEKRMDQLVGE 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30210g00002 631 Pfam ABC transporter 99 249 IPR003439 GO:0005524
Stsc30210g00002 631 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 33 614 - -
Stsc30210g00002 631 SMART AAA_5 107 298 IPR003593 GO:0016887
Stsc30210g00002 631 MobiDBLite consensus disorder prediction 1 22 - -
Stsc30210g00002 631 FunFam ABC transporter G family member 22 86 315 - -
Stsc30210g00002 631 MobiDBLite consensus disorder prediction 1 41 - -
Stsc30210g00002 631 Pfam ABC-2 type transporter 408 609 IPR013525 GO:0016020|GO:0140359
Stsc30210g00002 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 314 IPR027417 -
Stsc30210g00002 631 Gene3D - 88 315 IPR027417 -
Stsc30210g00002 631 Pfam ABC-2 type transporter 278 384 IPR043926 GO:0140359
Stsc30210g00002 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 49 321 IPR003439 GO:0005524
Stsc30210g00002 631 MobiDBLite consensus disorder prediction 374 393 - -
Stsc30210g00002 631 CDD ABCG_EPDR 95 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30210g00002 Stsc-Chr30210 21147 27672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30210g00002 97 335 Calmodulin-binding Proteins AT2G36910 28.807 2.20e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30210g00002 K05681 - gmx:100812367 1010.36