Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30209g00089 ATGAAGATTCAGTGCAACGTGTGTGAGGCTGCTGAGGCTAAAGTTCTGTGCTGTGCTGATGAGGCTGCTCTTTGTTGGGAGTGTGATGAGAAGGTTCATGCTGCTAACAAGCTCGCCAGCAAGCACCAGAGGGTTCCACTTTCCATGTCTTCTTCTCATATGCCCAAATGTGATATTTGTCAGGAAGCATTTGGCTATTTCTTCTGTCTAGAGGATCGAGCTTTACTGTGTCGGAAGTGTGACGTGGCGATACACACCGCGAATTCTTATGTCTCGGGTCATCAGAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTAGAAGCAACCGAGCCCGGTGGCACTTCCTCAACTTCTTTGAAGTCGGATTCCGGGGAAAAAGCTTCTGACAAGTCCTCTTCTGTCTCCAGAAAGCTGTCAACGATGCCCCAGTCGTCGGATTACAATGAAATGTTACCACTTGATGCTGGGGGAGTCGGTGAGTTGCAGCCGGCTAAGGTGTCTTATGGCGGTGGTTCTACCACCGGAAATATCTCGCAGTGGCCGATCGATGAATTCCTTGGCCTTAATGATTTCGGTCAAGGTTATAATTACATGGAAGGATCATCAAAGGGTGATAATGGTAAGCTTGGGGATTCCGATTCTCCGGTCCTAAGATCCGCGGAAGAGGAAATGGAAATGGAGGACAGCGACGACTACCTGATCCGCGTTCCAGATTCATCGTGGACAGTTCCGCAGGTCCCTTCGCCTCCTACAGCTTCAGGGTTATACTGGCCGAAAGACCCTCCAAGTTCAACCGATCATGCTATGTTTGTTCCGGACATATGCTGTTCTCCCATGCAAGAGGCTCGGAGTAGTACCATTTTTTCGAGGCGGCGGAGGCACCACCTTTGA 891 0.4994 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSMSSSHMPKCDICQEAFGYFFCLEDRALLCRKCDVAIHTANSYVSGHQRFLLTGVRVGLEATEPGGTSSTSLKSDSGEKASDKSSSVSRKLSTMPQSSDYNEMLPLDAGGVGELQPAKVSYGGGSTTGNISQWPIDEFLGLNDFGQGYNYMEGSSKGDNGKLGDSDSPVLRSAEEEMEMEDSDDYLIRVPDSSWTVPQVPSPPTASGLYWPKDPPSSTDHAMFVPDICCSPMQEARSSTIFSRRRRHHL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30209g00089 296 CDD Bbox1_BBX-like 5 47 - -
Stsc30209g00089 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Stsc30209g00089 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 275 - -
Stsc30209g00089 296 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Stsc30209g00089 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Stsc30209g00089 296 FunFam B-box zinc finger protein 22 1 93 - -
Stsc30209g00089 296 MobiDBLite consensus disorder prediction 109 154 - -
Stsc30209g00089 296 MobiDBLite consensus disorder prediction 133 147 - -
Stsc30209g00089 296 Gene3D Classic Zinc Finger 1 92 - -
Stsc30209g00089 296 SMART bboxneu5 4 47 IPR000315 GO:0008270
Stsc30209g00089 296 SMART bboxneu5 52 99 IPR000315 GO:0008270
Stsc30209g00089 296 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30209g00089 Stsc-Chr30209 744418 747082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30209g00089 1 293 C2C2-CO-like Transcription Factor Family AT1G78600 48.780 3.72e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Stsc30209g00089 zf-B_box 6.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30209g00089 - - gmx:100790959 455.292