Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30209g00086 ATGGTTGGATTCCAGAACAGTGAGCACATGCCTGGGAGCAAGTGTAACGGTAATTCTAACAATTTTCCAGGTCGAGTTGAACGACTTGTGAGAGGGAGAGAGCTAAGAAGAAGTAGTAGGGCATCACTTTCAGTTGAGTCTCCTGATTATAGTAATAATAATAATCATAATAATGTTAATGGCGTTGCTGAATATTTTGAGCATGATCTGCGCTTGGGAGAAGAGAATAATTCCTATGTTGAACGCTCCCTAGAAGGGGTGGTAGCAGCATCAAAGGCTCTTCGTGAAAGGGATGATGGGAAGCCTTTCAGGCAACGGCTTTTGGTTGTTGCCAATAGGCTTCCTGTCTCAGCAGTTAGGAGAGGTGAGGATTCATGGTCTCTGGAGATAAGTGCCGGTGGCTTGGTCAGCGCTCTCTTAGGTGTGAAGGAATTTGAGGCAAGGTGGATAGGTTGGGCTGGAGTCAATGTTCCTGATGAGATTGGACAGAAGGCACTGACTAAAGCATTGGCTGAAAAAAGATGTATACCGGTTTTTCTTGATGAAGAGATTGTTCATCAATACTACAATGGCTATTGCAACAACATATTGTGGCCCCTTTTCCATTACCTTCAACTTCCACAAGAAGACCGCCTTGCCACCACACGAAGTTTTCAGTCCCAGTTTACTGCTTATCAAAAAGCAAATCAAATGTTTGCTGATGTAGTAAATGAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGACTACCATCTTATGTTTCTTCCACAATGCTTGAAGAGATATAATAACAAAATGAAAGTTGGCTGGTTTCTACACACCCCATTTCCTTCTTCTGAAATTCACAGGACTCTGCCATCTCGATCGGAGCTGCTGCATGCAGTTCTTGCAGCTGACCTAGTTGGCTTTCACACCTATGATTATACACGGCATTTTGTTAGTTCATGTACACGCATCCTTGGACTTGAGGGCACCCCCGAAGGAGTTGAGTATCAAGGGAAGCTGACTCGAGTTGCTGCATTCCCAATTGGTATAGACTCGGAGCGATTTATACGAGCACTTGAACTTCCTCAAGTCCAGGAGCACATCAAAGAGTTAGAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATCAAAGGAATCCCGCAAAAACTTCTGGCATTTGAAAATTTTTTAGAAGAGAGTCCTTATTGGCGTGGTAAAGTTGTTCTGCTTCAAATTGCTGTTCCAACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGTCAGGTTCATGAAATTGTTGGTCGCATCAATGGAAGATTTGGATCATTGAATGCTGTTCCTATACATCACCTGGATCGCTCTCTTGACTTCCACGCATTATGTGCATTGTATGCTGTTACAGATGTTGCACTTGTCACATCATTGAGGGATGGAATGAATCTTGTCAGTTATGAATTTGTGGCTTGCCAAGCTAAAAAGAAAGGGGTTCTCATTCTTAGCGAATTTGCTGGTGCGGCGCAATCTCTTGGTGCTGGGGCAATTCTGGTCAACCCCTTGAACATCACACAAGTTGCTGCTGCAATTGACAAGGCTTTAAATATGGACTCAGTGGAAAGAAAAAACAGACATGAACATAACTATGAGCATGTAACACAACACACTGCTCAGGAATGGGCAGAAACTTTTGTCAGTGAACTAAATGATACTGTTGTTGAGGCACAGCTAAGGACAAAACAAAAACCACCCCCACTCCCAACCAAGACTGCTATCGAACGTTATCTGCGGTCAAGTAACAGATTGCTCATTTTGGGGTTCAATGGAACTTTAACTGAACCTGTCGAGAAAAGAGGTGACCAGTATAAAGAAATTGAGCTCACTGTGCATCCAGAGCTGAAACAACCCTTGAAAGAACTTTGTAGAGATTCAAAGACCACAATTGTTGTGCTAAGTGGAAGTGGTAGAGCAGTTCTAGATGAGAACTTCAAAGAGTATGACATGTGGCTGGCAGCAGAGAATGGGATGTTTTTAAACCCTTCAAAAGGAGAATGGATGACAACAATGCCAGAGCAGCTGAATATGGAATGGGTAGACAGTGTGAAGCTTGTTTTTGAGTACTTCAGGGATAGAACACCTCGGTCGCGTTTCGAAGAAAGGGAAGCTTCACTTGTGTGGAATTACAAACATGCAGATGTTGAGTTTGGAAGGGTTCAAGCAAGGGACATGCTGCAGCATCTTTGGACAGGCCCAATTTCTAATGCGTCAGTTGAAGTTGTTCAAGGTAGCCGATCCGTTGAGGTGCGAGCTGCTGGAGTCACTAAGGGCGCAGCAATTGACCGCATCCTGGGTGAGATAGTCCAAAGCAAATCCATGACAACACCGATTGATTATGTTCTTTGTATAGGACATTTTCTAGCAAAGGATGAAGACATTTTTGCGTTTTTTGAGCCTGAGCTTCCTTCTCCCGGTGTAGCTCTTCCACGAAGCAAGGTAACAGATGGAATCAAGTTTCCAGTTGAAAGGATGTCATCTTTGAAGATCCCTACTAACAAAAATGGAACAAAGTCATCTCAAAATAAGGCACAACGGCCGTCTCCGAATTCTGAGAAGAAACCAAACAATCATGTCTGCCGTGCACCGCGCCGCCCAGCTCCTGAAAAAGTCTCTTGGAACATCCTTGACTTGAACAAGGAGAATTACTTTTCTTGTGCCGTTGGACGGACACAGACGAATGCTCGCTATACGCTTGGATCTTCAGACGACGTCGTCGGATTTCTGAAGGAGCTAGCGGGAGCTTCTTCTAACTCTATCTGA 2823 0.4375 MVGFQNSEHMPGSKCNGNSNNFPGRVERLVRGRELRRSSRASLSVESPDYSNNNNHNNVNGVAEYFEHDLRLGEENNSYVERSLEGVVAASKALRERDDGKPFRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLQLPQEDRLATTRSFQSQFTAYQKANQMFADVVNEHYEEGDVVWCHDYHLMFLPQCLKRYNNKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYTRHFVSSCTRILGLEGTPEGVEYQGKLTRVAAFPIGIDSERFIRALELPQVQEHIKELEERFKGRKVMLGVDRLDMIKGIPQKLLAFENFLEESPYWRGKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLNAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQAKKKGVLILSEFAGAAQSLGAGAILVNPLNITQVAAAIDKALNMDSVERKNRHEHNYEHVTQHTAQEWAETFVSELNDTVVEAQLRTKQKPPPLPTKTAIERYLRSSNRLLILGFNGTLTEPVEKRGDQYKEIELTVHPELKQPLKELCRDSKTTIVVLSGSGRAVLDENFKEYDMWLAAENGMFLNPSKGEWMTTMPEQLNMEWVDSVKLVFEYFRDRTPRSRFEEREASLVWNYKHADVEFGRVQARDMLQHLWTGPISNASVEVVQGSRSVEVRAAGVTKGAAIDRILGEIVQSKSMTTPIDYVLCIGHFLAKDEDIFAFFEPELPSPGVALPRSKVTDGIKFPVERMSSLKIPTNKNGTKSSQNKAQRPSPNSEKKPNNHVCRAPRRPAPEKVSWNILDLNKENYFSCAVGRTQTNARYTLGSSDDVVGFLKELAGASSNSI 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30209g00086 940 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 106 571 IPR012766 GO:0003825|GO:0005992
Stsc30209g00086 940 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 98 933 IPR001830 GO:0003824|GO:0005992
Stsc30209g00086 940 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 105 574 - -
Stsc30209g00086 940 Pfam Trehalose-phosphatase 609 833 IPR003337 GO:0003824|GO:0005992
Stsc30209g00086 940 SUPERFAMILY HAD-like 603 933 IPR036412 -
Stsc30209g00086 940 CDD HAD_TPP 604 821 - -
Stsc30209g00086 940 Pfam Glycosyltransferase family 20 106 571 IPR001830 GO:0003824|GO:0005992
Stsc30209g00086 940 Gene3D - 606 816 IPR023214 -
Stsc30209g00086 940 Gene3D - 693 773 - -
Stsc30209g00086 940 MobiDBLite consensus disorder prediction 1 58 - -
Stsc30209g00086 940 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 693 773 - -
Stsc30209g00086 940 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 98 352 - -
Stsc30209g00086 940 Gene3D Glycogen Phosphorylase B; 353 555 - -
Stsc30209g00086 940 NCBIfam trehalose-phosphatase 602 818 IPR003337 GO:0003824|GO:0005992
Stsc30209g00086 940 MobiDBLite consensus disorder prediction 848 875 - -
Stsc30209g00086 940 MobiDBLite consensus disorder prediction 1 23 - -
Stsc30209g00086 940 MobiDBLite consensus disorder prediction 845 884 - -
Stsc30209g00086 940 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 353 555 - -
Stsc30209g00086 940 Gene3D Glycogen Phosphorylase B; 98 352 - -
Stsc30209g00086 940 CDD GT20_TPS 106 571 IPR001830 GO:0003824|GO:0005992
Stsc30209g00086 940 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30209g00086 Stsc-Chr30209 676976 696014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30209g00086 10 938 Trehalose Biosynthesis Gene Families AT1G78580 74.526 0.0 1425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30209g00086 K16055 - gmx:100789554 1543.48