Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30209g00074 ATGCAGAACGAAGAGGGACAGATCACCGAGCTCTACATTCCTAGGAAGTGCTCTGCAACAAACAGGTTGATAACCTCAAAGGATCATGCGTCTGTTCAGATTAACATTGGTCACTTGGATGAGAGTGGTATATATAATAATACGTTCTCTACATTTGCCCTCTGTGGCTTCATTCGCGCACAGGGTGATGCTGACAGTGCACTAGACCGCTTGTGGCAGAAGAAGAAAGTGGAGAAGCAGCAGCAATAG 249 0.4618 MQNEEGQITELYIPRKCSATNRLITSKDHASVQINIGHLDESGIYNNTFSTFALCGFIRAQGDADSALDRLWQKKKVEKQQQ 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30209g00074 82 Gene3D - 1 82 IPR038579 -
Stsc30209g00074 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 79 IPR001931 GO:0003735|GO:0005840|GO:0006412
Stsc30209g00074 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Stsc30209g00074 82 FunFam 40S ribosomal protein S21 1 81 - -
Stsc30209g00074 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Stsc30209g00074 82 Pfam Ribosomal protein S21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30209g00074 Stsc-Chr30209 570134 572281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30209g00074 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 82.716 2.65e-50 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30209g00074 K02971 - gmx:100817753 155.992